QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

Glyn Nelson; Ulrike Boehm; Steve Bagley; Peter Bajcsy; Johanna Bischof; Claire M Brown; Aurelien Dauphin; Ian M Dobbie; John E Eriksson; Orestis Faklaris; Julia Fernandez-Rodriguez; Alexia Ferrand; Laurent Gelman; Ali Gheisari; Hella Hartmann; Christian Kukat; Alex Laude; Miso Mitkovski; Sebastian Munck; Alison J North; Tobias M Rasse; Ute Resch-Genger; Lucas C Schuetz; Arne Seitz; Caterina Strambio-De-Castillia; Jason R Swedlow; Ioannis Alexopoulos; Karin Aumayr; Sergiy Avilov; Gert-Jan Bakker; Rodrigo R Bammann; Andrea Bassi; Hannes Beckert; Sebastian Beer; Yury Belyaev; Jakob Bierwagen; Konstantin A Birngruber; Manel Bosch; Juergen Breitlow; Lisa A Cameron; Joe Chalfoun; James J Chambers; Chieh-Li Chen; Eduardo Conde-Sousa; Alexander D Corbett; Fabrice P Cordelieres; Elaine del Nery; Ralf Dietzel; Frank Eismann; Elnaz Fazeli; Andreas Felscher; Hans Fried; Nathalie Gaudreault; Wah Ing Goh; Thomas Guilbert; Roland Hadleigh; Peter Hemmerich; Gerhard A Holst; Michelle S Itano; Claudia B Jaffe; Helena K Jambor; Stuart C Jarvis; Antje Keppler; David Kirchenbuechler; Marcel Kirchner; Norio Kobayashi; Gabriel Krens; Susanne Kunis; Judith Lacoste; Marco Marcello; Gabriel G Martins; Daniel J Metcalf; Claire A Mitchell; Joshua Moore; Tobias Mueller; Michael S Nelson; Stephen Ogg; Shuichi Onami; Alexandra L Palmer; Perrine Paul-Gilloteaux; Jaime A Pimentel; Laure Plantard; Santosh Podder; Elton Rexhepaj; Arnaud Royon; Markku A Saari; Damien Schapman; Vincent Schoonderwoert; Britta Schroth-Diez; Stanley Schwartz; Michael Shaw; Martin Spitaler; Martin T Stoeckl; Damir Sudar; Jeremie Teillon; Stefan Terjung; Roland Thuenauer; Christian D Wilms; Graham D Wright; Roland Nitschke

doi:10.1111/jmi.13041

Retour

QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

Document de travail

Open Access

QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

Glyn Nelson, Ulrike Boehm, Steve Bagley, Peter Bajcsy, Johanna Bischof, Claire M Brown, Aurelien Dauphin, Ian M Dobbie, John E Eriksson, Orestis Faklaris, …

10/2021

DOI: https://doi.org/10.1111/jmi.13041

Résumé

In April 2020, the QUality Assessment and REProducibility for Instruments and Images in Light Microscopy (QUAREP-LiMi) initiative was formed. This initiative comprises imaging scientists from academia and industry who share a common interest in achieving a better understanding of the performance and limitations of microscopes and improved quality control (QC) in light microscopy. The ultimate goal of the QUAREP-LiMi initiative is to establish a set of common QC standards, guidelines, metadata models, and tools, including detailed protocols, with the ultimate aim of improving reproducible advances in scientific research. This White Paper 1) summarizes the major obstacles identified in the field that motivated the launch of the QUAREP-LiMi initiative; 2) identifies the urgent need to address these obstacles in a grassroots manner, through a community of stakeholders including, researchers, imaging scientists, bioimage analysts, bioimage informatics developers, corporate partners, funding agencies, standards organizations, and scientific publishers; 3) outlines the current actions of the QUAREP-LiMi initiative, and 4) proposes future steps that can be taken to improve the dissemination and acceptance of the proposed guidelines to manage QC. To summarize, the principal goal of the QUAREP-LiMi initiative is to improve the overall quality and reproducibility of light microscope image data by introducing broadly accepted standard practices and accurately captured image data metrics.

Fichiers et liens (2)

url

Find in HALAfficher

url

https://doi.org/10.1111/jmi.13041Afficher

Published (Version of record) Ouvrir

Indicateurs

1 Consultations de la notice

See more details

Détails

Titre: QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy
Créateurs - sans rôle: Glyn Nelson - Newcastle University
Ulrike Boehm - Janelia Research Campus
Steve Bagley - Cancer Research UK Manchester Institute
Peter Bajcsy - National Institute of Standards and Technology
Johanna Bischof - European Molecular Biology Organization
Claire M Brown - McGill University
Aurelien Dauphin - Inserm
Ian M Dobbie - University of Oxford
John E Eriksson - Turku Centre for Biotechnology
Orestis Faklaris - Université de Montpellier, BioCampus Montpellier - BCM
Julia Fernandez-Rodriguez - University of Gothenburg
Alexia Ferrand - University of Basel
Laurent Gelman - Friedrich Miescher Institute
Ali Gheisari - Technische Universität Dresden
Hella Hartmann - Technische Universität Dresden
Christian Kukat - Max Planck Institute for Biology of Ageing
Alex Laude - Newcastle University
Miso Mitkovski - Max Planck Institute of Experimental Medicine
Sebastian Munck - VIB-KU Leuven Center for Brain & Disease Research
Alison J North - Rockefeller University
Tobias M Rasse - Max Planck Institute for Heart and Lung Research
Ute Resch-Genger - Federal Institute For Materials Research and Testing
Lucas C Schuetz - European Molecular Biology Laboratory
Arne Seitz - École Polytechnique Fédérale de Lausanne
Caterina Strambio-De-Castillia - University of Massachusetts Chan Medical School
Jason R Swedlow - University of Dundee
Ioannis Alexopoulos - Radboud University Nijmegen
Karin Aumayr - Research Institute of Molecular Pathology
Sergiy Avilov - Max Planck Institute of Immunobiology and Epigenetics
Gert-Jan Bakker - Radboud Institute for Molecular Life Sciences
Rodrigo R Bammann - Scientifica
Andrea Bassi - Politecnico di Milano
Hannes Beckert - University of Bonn
Sebastian Beer - Hamamatsu Photonics
Yury Belyaev - University of Bern
Jakob Bierwagen - Sans affiliation
Konstantin A Birngruber - Toptica Photonics
Manel Bosch - Universitat de Barcelona
Juergen Breitlow - PicoQuant
Lisa A Cameron - Duke University
Joe Chalfoun - National Institute of Standards and Technology
James J Chambers - University of Massachusetts Amherst
Chieh-Li Chen - Sans affiliation
Eduardo Conde-Sousa - i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto
Alexander D Corbett - University of Exeter
Fabrice P Cordelieres - Bordeaux Imaging Center
Elaine del Nery - Université Paris Sciences et Lettres
Ralf Dietzel - Sans affiliation
Frank Eismann - Carl Zeiss
Elnaz Fazeli - University of Turku
Andreas Felscher - Coherent
Hans Fried - German Center for Neurodegenerative Diseases
Nathalie Gaudreault - Allen Institute for Cell Science
Wah Ing Goh - Agency for Science, Technology and Research
Thomas Guilbert - Institut Cochin
Roland Hadleigh - East Sussex County Council
Peter Hemmerich - Leibniz Institute on Aging - Fritz Lipmann Institute (FLI)
Gerhard A Holst - Sans affiliation
Michelle S Itano - University of North Carolina at Chapel Hill
Claudia B Jaffe - Carepayment
Helena K Jambor - University Hospital Carl Gustav Carus
Stuart C Jarvis - Oxford Instruments
Antje Keppler - European Molecular Biology Organization
David Kirchenbuechler - Northwestern University
Marcel Kirchner - Max Planck Institute for Biology of Ageing
Norio Kobayashi - RIKEN
Gabriel Krens - Institute of Science and Technology Austria
Susanne Kunis - Osnabrück University
Judith Lacoste - Sans affiliation
Marco Marcello - University of Liverpool
Gabriel G Martins - Instituto Gulbenkian de Ciência
Daniel J Metcalf - Scientifica
Claire A Mitchell - University of Warwick
Joshua Moore - University of Dundee
Tobias Mueller - Gregor Mendel Institute of Molecular Plant Biology
Michael S Nelson - City of Hope
Stephen Ogg - University of Alberta
Shuichi Onami - RIKEN Center for Biosystems Dynamics Research
Alexandra L Palmer - The Francis Crick Institute
Perrine Paul-Gilloteaux - Inserm
Jaime A Pimentel - Universidad Nacional Autónoma de México
Laure Plantard - Friedrich Miescher Institute
Santosh Podder - Indian Institute of Science Education and Research Pune
Elton Rexhepaj - Sanofi
Arnaud Royon - nLIGHT
Markku A Saari - University of Turku
Damien Schapman - Université de Rouen Normandie
Vincent Schoonderwoert - Sans affiliation
Britta Schroth-Diez - Max Planck Institute of Molecular Cell Biology and Genetics
Stanley Schwartz - Nikon
Michael Shaw - National Physical Laboratory
Martin Spitaler - Max Planck Institute of Biochemistry
Martin T Stoeckl - University of Konstanz
Damir Sudar - Sans affiliation
Jeremie Teillon - Université de Bordeaux
Stefan Terjung - European Molecular Biology Laboratory
Roland Thuenauer - Leibniz Institute of Virology (LIV)
Christian D Wilms - Scientifica
Graham D Wright - Agency for Science, Technology and Research
Roland Nitschke - University of Freiburg
Identifiants: 99160947209311
Unité académique: BioCampus Montpellier - BCM
Langue: English
Type de ressource: Working paper
Champs locaux: hal-03120748