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Visual Inspection of Sequencing Data for Diagnosis: Practical Guide to Structural Variant Analysis Using Integrative Genomics Viewer (IGV)
Article de revue

Visual Inspection of Sequencing Data for Diagnosis: Practical Guide to Structural Variant Analysis Using Integrative Genomics Viewer (IGV)

Benjamin Ganne, Clément Hersent, Vincent Gatinois, Franck Pellestor et Kevin Yauy
Methods in molecular biology (Clifton, N.J.), Vol.2968, pp.263-279
2025
PMID: 40884649

Résumé

Computational Biology - methods Genomic Structural Variation Genomics - methods High-Throughput Nucleotide Sequencing - methods Humans Sequence Analysis, DNA - methods Software
Next-generation sequencing (NGS) has revolutionized clinical genomics, enhancing structural variant (SV) analysis, especially found in chromothripsis. This guide focuses on key steps of SV interpretation using IGV, detailing methods for assessing SV veracity and distinguishing true SVs from artifacts. This resource aims to aid clinicians and researchers in effectively interpreting NGS-derived SV calling data to improve diagnostic accuracy and patient care.

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