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Uncovering the early and conserved molecular mechanisms of root nitrogen foraging in model and crops
Article de revue scientifique   Open Access   Avec comité de lecture

Uncovering the early and conserved molecular mechanisms of root nitrogen foraging in model and crops

Ying Li, Ryan M Patrick, Charles Peacock, Leo Koenigsfeld, Tara M Rock, Eleonore Bouguyon, Emily Kuhn, Marysara Albert, Kranthi Varala, W. Richard Mccombie, …
BMC Genomics
10/03/2026
PMID: 41803685

Résumé

nitrogen root foraging comparative transcriptomics gene networks split-root systemic signaling
Background: Nitrogen (N) foraging, the ability of plants to promote preferential root growth in N-rich patches of soil, is fundamental to the competitiveness and wellbeing of plants. A unique "split-root" system, where a heterogenous N environment stimulates root foraging, provides a powerful experimental model to study the mechanisms underlying root foraging in model (Arabidopsis) and/or crop plants.

Results: We used the split-root set up to capture early molecular events involved in systemic N-signaling after exposure to a heterogeneous N signal, through time-course transcriptomic analysis across shoots and roots of Arabidopsis. We found that a histone methyltransferase, SET DOMAIN GROUP 8 (SDG8), is necessary for root N-foraging, suggesting a previously unknown role for chromatin regulation in mediating the preferential root growth response to colonize N-rich patches. To determine if the underlying molecular mechanism is conserved in evolution, we compared the root foraging behavior from model-to-crop (Arabidopsis, tomato and maize). Our analysis showed the model and crop species shared a root N-foraging growth.

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