Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Adam J. Bogdanove; Ralf Koebnik; Hong Lu; Ayako Furutani; Samuel V. Angiuoli; Prabhu B. Patil; Marie-Anne van Sluys; Robert P. Ryan; Damien Meyer; Sang-Wook Han; Gudlur Aparna; Misha Rajaram; Arthur L. Delcher; Adam M. Phillippy; Daniela Puiu; Michael C. Schatz; Martin Shumway; Daniel D. Sommer; Cole Trapnell; Faiza Benahmed; George Dimitrov; Ramana Madupu; Diana Radune; Steven Sullivan; Gopaljee Jha; Hiromichi Ishihara; Sang-Won Lee; Alok Pandey; Vikas Sharma; Malinee Sriariyanun; Boris Szurek; Casiana M. Vera-Cruz; Karin S. Dorman; Pamela C. Ronald; Valérie Verdier; J. Maxwell Dow; Ramesh V. Sonti; Seiji Tsuge; Volker P. Brendel; Pablo D. Rabinowicz; Jan E. Leach; Frank F. White; Steven L. Salzberg

doi:10.1128/JB.05262-11

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Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

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Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Adam J. Bogdanove, Ralf Koebnik, Hong Lu, Ayako Furutani, Samuel V. Angiuoli, Prabhu B. Patil, Marie-Anne van Sluys, Robert P. Ryan, Damien Meyer, Sang-Wook Han, …

Journal of Bacteriology, Vol.193(19), p.5450-5464

2011

DOI: https://doi.org/10.1128/JB.05262-11

PMCID: PMC3187462

Résumé

plante

bactérie

xanthomonas

génome

Xanthomonas is a large genus of bacteria that collectively cause disease on more than 300 plant species. The broad host range of the genus contrasts with stringent host and tissue specificity for individual species and pathovars. Whole-genome sequences of Xanthomonas campestris pv. raphani strain 756C and X. oryzae pv. oryzicola strain BLS256, pathogens that infect the mesophyll tissue of the leading models for plant biology, Arabidopsis thaliana and rice, respectively, were determined and provided insight into the genetic determinants of host and tissue specificity. Comparisons were made with genomes of closely related strains that infect the vascular tissue of the same hosts and across a larger collection of complete Xanthomonas genomes. The results suggest a model in which complex sets of adaptations at the level of gene content account for host specificity and subtler adaptations at the level of amino acid or noncoding regulatory nucleotide sequence determine tissue specificity.

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Titre: Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.
Créateurs - sans rôle: Adam J. Bogdanove - Iowa State University
Ralf Koebnik - Institut de Recherche pour le Développement
Hong Lu - Iowa State University
Ayako Furutani - Institute of Agrobiological Sciences
Samuel V. Angiuoli - University of Maryland, College Park
Prabhu B. Patil - Council of Scientific and Industrial Research
Marie-Anne van Sluys - Colorado State University
Robert P. Ryan - University College Cork
Damien Meyer - Iowa State University
Sang-Wook Han - Plant (United States)
Gudlur Aparna - Council of Scientific and Industrial Research
Misha Rajaram - Iowa State University
Arthur L. Delcher - University of Maryland, Baltimore
Adam M. Phillippy - University of Maryland, College Park
Daniela Puiu - University of Maryland, College Park
Michael C. Schatz - Cold Spring Harbor Laboratory
Martin Shumway - National Center for Biotechnology Information
Daniel D. Sommer - Center for Bioinformatics and Computational Biology
Cole Trapnell - Harvard University
Faiza Benahmed - Center for Veterinary Medicine
George Dimitrov - Genomic (Brazil)
Ramana Madupu - Genomic (Brazil)
Diana Radune - Genomic (Brazil)
Steven Sullivan - New York University
Gopaljee Jha - Centre for Cellular and Molecular Biology
Hiromichi Ishihara - Okayama University
Sang-Won Lee - Plant (United States)
Alok Pandey - Centre for Cellular and Molecular Biology
Vikas Sharma - Council of Scientific and Industrial Research
Malinee Sriariyanun - University of California, Davis
Boris Szurek - Centre de Coopération Internationale en Recherche Agronomique pour le Développement
Casiana M. Vera-Cruz - International Rice Research Institute
Karin S. Dorman - Iowa State University
Pamela C. Ronald - University of California, Davis
Valérie Verdier - Centre de Coopération Internationale en Recherche Agronomique pour le Développement
J. Maxwell Dow - University College Cork
Ramesh V. Sonti - Centre for Cellular and Molecular Biology
Seiji Tsuge - Kyoto Prefectural University
Volker P. Brendel - Iowa State University
Pablo D. Rabinowicz - University of Maryland, Baltimore
Jan E. Leach - Colorado State University
Frank F. White - Kansas State University
Steven L. Salzberg - Johns Hopkins University
Détails de publication: Journal of Bacteriology, Vol.193(19), p.5450-5464
Note de subvention: USDA-NSF Microbial Genome Sequencing Program (award CSREES 20043560015022)
Identifiants: 9938769309311
Unité académique: ASTRE - Animal, Santé, Territoires, Risques et Ecosystèmes
Langue: Anglais
Type de ressource: Article de revue scientifique
Champs locaux: hal-02650254