The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics

Valentin Guignon; Yann Hueber; Mathieu Rouard; Stéphanie Bocs; David Couvin; Frédéric F. de Lamotte; Gaëtan Droc; Jean-François Dufayard; Nordine El Hassouni; Cédric Farcy; Anestis Gkanogiannis; Chantal Hamelin; Delphine Larivière; Guillaume Martin; Enrique Ortega; Bertrand Pitollat; Stéphanie Pointet; Manuel Ruiz; Gautier Sarah; Marilyne Summo; Dominique This; Sébastien Ravel; Pierre Larmande; Cécile Monat; Francois Sabot; Ndomassi Tando; Christine Tranchant-Dubreuil; Guilhem Sempere; Alexis Dereeper

doi:10.1016/j.cpb.2016.12.002

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The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics

Journal article

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The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics

Valentin Guignon, Yann Hueber, Mathieu Rouard, Stéphanie Bocs, David Couvin, Frédéric F. de Lamotte, Gaëtan Droc, Jean-François Dufayard, Nordine El Hassouni, Cédric Farcy, …

Current Plant Biology, Vol.7-8, pp.6-9

2016

DOI: https://doi.org/10.1016/j.cpb.2016.12.002

Abstract

crop databases

next Generation Sequencing

pipeline

workflow

genomics

galaxy

sequence variants

plante méditerranéenne

plante tropicale

interface d'application

interface informatique

système d'information

base de données

donnée génomique

The South Green Web portal (http://www.southgreen.fr/http://www.southgreen.fr/) provides access to a large panel of public databases, analytical workflows and bioinformatics resources dedicated to the genomics of tropical and Mediterranean crops. The portal contains currently about 20 information systems and tools and targets a broad range of crops such as Banana, Cacao, Cassava, Coconut, Coffee, Grape, Rice and Sugarcane.

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Title: The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics
Creators - without role: Valentin Guignon - Agropolis International
Yann Hueber - Alliance Bioversity International - CIAT
Mathieu Rouard - Alliance Bioversity International - CIAT
Stéphanie Bocs - Centre de Coopération Internationale en Recherche Agronomique pour le Développement
David Couvin - Genetic Improvement and Adaptation of Mediterranean and Tropical Plants
Frédéric F. de Lamotte - Agropolis International
Gaëtan Droc - Genetic Improvement and Adaptation of Mediterranean and Tropical Plants
Jean-François Dufayard - Genetic Improvement and Adaptation of Mediterranean and Tropical Plants
Nordine El Hassouni - Genetic Improvement and Adaptation of Mediterranean and Tropical Plants
Cédric Farcy - Genetic Improvement and Adaptation of Mediterranean and Tropical Plants
Anestis Gkanogiannis - Genetic Improvement and Adaptation of Mediterranean and Tropical Plants
Chantal Hamelin - Genetic Improvement and Adaptation of Mediterranean and Tropical Plants
Delphine Larivière - Genetic Improvement and Adaptation of Mediterranean and Tropical Plants
Guillaume Martin - Genetic Improvement and Adaptation of Mediterranean and Tropical Plants
Enrique Ortega - Genetic Improvement and Adaptation of Mediterranean and Tropical Plants
Bertrand Pitollat - Centre de Coopération Internationale en Recherche Agronomique pour le Développement
Stéphanie Pointet - Genetic Improvement and Adaptation of Mediterranean and Tropical Plants
Manuel Ruiz - Genetic Improvement and Adaptation of Mediterranean and Tropical Plants
Gautier Sarah - Genetic Improvement and Adaptation of Mediterranean and Tropical Plants
Marilyne Summo - Genetic Improvement and Adaptation of Mediterranean and Tropical Plants
Dominique This - Institut Agro Montpellier
Sébastien Ravel - Biologie et Génétique des Interactions Plante-Parasite
Pierre Larmande - Université de Montpellier, Diversité, Adaptation et Développement des plantes - DIADE
Cécile Monat - Université de Montpellier, Diversité, Adaptation et Développement des plantes - DIADE
Francois Sabot - Université de Montpellier, Diversité, Adaptation et Développement des plantes - DIADE
Ndomassi Tando - Université de Montpellier, Diversité, Adaptation et Développement des plantes - DIADE
Christine Tranchant-Dubreuil - Université de Montpellier, Diversité, Adaptation et Développement des plantes - DIADE
Guilhem Sempere - Interactions hotes-vecteurs-parasites-environnement dans les maladies tropicales négligées dues aux trypanosomatides
Alexis Dereeper - Université de Montpellier, Plant Health Institute of Montpellier - PHIM
Publication Details: Current Plant Biology, Vol.7-8, pp.6-9
Identifiers: 9980147009311
Academic Unit: Diversité, Adaptation et Développement des plantes - DIADE; Plant Health Institute of Montpellier - PHIM
Language: English
Resource Type: Journal article
Local Fields: hal-02631148