The ProDom database of protein domain families: more emphasis on 3D

Catherine Bru; Emmanuel Courcelle; Sébastien Carrère; Yoann Beausse; Sandrine Dalmar; Daniel Kahn

doi:10.1093/nar/gki034

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The ProDom database of protein domain families: more emphasis on 3D

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The ProDom database of protein domain families: more emphasis on 3D

Catherine Bru, Emmanuel Courcelle, Sébastien Carrère, Yoann Beausse, Sandrine Dalmar et Daniel Kahn

Nucleic acids research, Vol.33(Database issue), pp.D212-D215

01/01/2005

DOI: https://doi.org/10.1093/nar/gki034

PMID: 15608179

Résumé

Computer Graphics

Databases, Protein

Genomics

Internet

Models, Molecular

Protein Structure, Tertiary

Proteins - chemistry

Proteins - classification

Sequence Alignment

Sequence Analysis, Protein

User-Computer Interface

ProDom is a comprehensive database of protein domain families generated from the global comparison of all available protein sequences. Recent improvements include the use of three-dimensional (3D) information from the SCOP database; a completely redesigned web interface (http://www.toulouse.inra.fr/prodom.html); visualization of ProDom domains on 3D structures; coupling of ProDom analysis with the Geno3D homology modelling server; Bayesian inference of evolutionary scenarios for ProDom families. In addition, we have developed ProDom-SG, a ProDom-based server dedicated to the selection of candidate proteins for structural genomics.

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Détails

Titre: The ProDom database of protein domain families: more emphasis on 3D
Créateurs - sans rôle: Catherine Bru - Laboratoire des Interactions Plantes-Microorganismes, INRA/CNRS, BP 27, F-31326 Castanet-Tolosan Cedex, France
Emmanuel Courcelle
Sébastien Carrère
Yoann Beausse
Sandrine Dalmar
Daniel Kahn
Détails de publication: Nucleic acids research, Vol.33(Database issue), pp.D212-D215
Identifiants: 99162808609311
Unité académique: Institut de Recherche en Cancérologie de Montpellier - IRCM
Langue: English
Type de ressource: Journal article