The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science

Richard Bruskiewich; Martin Senger; Guy Davenport; Manuel Ruiz; Mathieu Rouard; Tom Hazekamp; Masaru Takeya; Koji Doi; Kouji Satoh; Marcos Costa; Reinhard Simon; Jayashree Balaji; Akinnola Akintunde; Ramil Mauleon; Samart Wanchana; Trushar Shah; Mylah Anacleto; Arllet Portugal; Victor Jun Ulat; Supat Thongjuea; Kyle Braak; Sebastian Ritter; Alexis Dereeper; Milko Skofic; Edwin Rojas; Natalia Martins; Georgios Pappas; Ryan Alamban; Roque Almodiel; Lord Hendrix Barboza; Jeffrey Detras; Kevin Manansala; Michael Jonathan Mendoza; Jeffrey Morales; Barry Peralta; Rowena Valerio; Yi Zhang; Sergio Gregorio; Joseph Hermocilla; Michael Echavez; Jan Michael Yap; Andrew Farmer; Gary Schiltz; Jennifer Lee; Terry Casstevens; Pankaj Jaiswal; Ayton Meintjes; Mark Wilkinson; Benjamin Good; James Wagner; Jane Morris; David Marshall; Anthony Collins; Shoshi Kikuchi; Thomas Metz; Graham McLaren; Theo van Hintum

doi:10.1155/2008/369601

Retour

The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science

Article de revue

Avec comité de lecture

The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science

Richard Bruskiewich, Martin Senger, Guy Davenport, Manuel Ruiz, Mathieu Rouard, Tom Hazekamp, Masaru Takeya, Koji Doi, Kouji Satoh, Marcos Costa, …

International journal of plant genomics, Vol.2008(2008), pp.1-6

2008

DOI: https://doi.org/10.1155/2008/369601

PMID: 18483570

Résumé

The Generation Challenge programme (GCP) is a global crop research consortium directed toward crop improvement through the application of comparative biology and genetic resources characterization to plant breeding. A key consortium research activity is the development of a GCP crop bioinformatics platform to support GCP research. This platform includes the following: (i) shared, public platform-independent domain models, ontology, and data formats to enable interoperability of data and analysis flows within the platform; (ii) web service and registry technologies to identify, share, and integrate information across diverse, globally dispersed data sources, as well as to access high-performance computational (HPC) facilities for computationally intensive, high-throughput analyses of project data; (iii) platform-specific middleware reference implementations of the domain model integrating a suite of public (largely open-access/-source) databases and software tools into a workbench to facilitate biodiversity analysis, comparative analysis of crop genomic data, and plant breeding decision making.

Indicateurs

1 Consultations de la notice

Détails

Titre: The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science
Créateurs - sans rôle: Richard Bruskiewich - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Martin Senger - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Guy Davenport - Crop Research Informatics Laboratory, International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, Mexico, DF 06600, Mexico
Manuel Ruiz - Agropolis International
Mathieu Rouard - Bioversity International, Via dei Tre Denari 472/a, 00057 Maccarese (Fiumicino), Rome, Italy
Tom Hazekamp - Bioversity International, Via dei Tre Denari 472/a, 00057 Maccarese (Fiumicino), Rome, Italy
Masaru Takeya - National Institute for Agrobiological Sciences (NIAS), Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
Koji Doi - National Institute for Agrobiological Sciences (NIAS), Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
Kouji Satoh - National Institute for Agrobiological Sciences (NIAS), Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
Marcos Costa - Empresa Brasileira de Pesquisa Agropecuaria (EMBRAPA), Parque Estação Biologia Final W5 Norte, Brasilia, DF 70770-900, Brazil
Reinhard Simon - Centro Internacional de la Papa (CIP), Avenida La Molina 1895, La Molina, Apartado Postal 1558, Lima 12, Peru
Jayashree Balaji - International Crops Research Institute for the Semi-Arid Tropics, Patancheru, Andhra Pradesh 502324, India
Akinnola Akintunde - International Center for Agricultural Research in the Dry Areas, P.O. Box 5466, Aleppo, Syria
Ramil Mauleon - International Rice Research Institute
Samart Wanchana - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines, National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Phahonyothin Road, Klong 1, Klong Luang, Pathumthani 12120, Thailand
Trushar Shah - Crop Research Informatics Laboratory, International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, Mexico, DF 06600, Mexico
Mylah Anacleto - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Arllet Portugal - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Victor Jun Ulat - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Supat Thongjuea - National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Phahonyothin Road, Klong 1, Klong Luang, Pathumthani 12120, Thailand
Kyle Braak - Crop Research Informatics Laboratory, International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, Mexico, DF 06600, Mexico
Sebastian Ritter - Crop Research Informatics Laboratory, International Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, Mexico, DF 06600, Mexico
Alexis Dereeper - Centre International de Recherche Agronomique pour le Développement (CIRAD), Avenue Agropolis, Montpellier, Cedex 5 34398, France
Milko Skofic - Bioversity International, Via dei Tre Denari 472/a, 00057 Maccarese (Fiumicino), Rome, Italy
Edwin Rojas - Centro Internacional de la Papa (CIP), Avenida La Molina 1895, La Molina, Apartado Postal 1558, Lima 12, Peru
Natalia Martins - Empresa Brasileira de Pesquisa Agropecuaria (EMBRAPA), Parque Estação Biologia Final W5 Norte, Brasilia, DF 70770-900, Brazil
Georgios Pappas - Empresa Brasileira de Pesquisa Agropecuaria (EMBRAPA), Parque Estação Biologia Final W5 Norte, Brasilia, DF 70770-900, Brazil
Ryan Alamban - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Roque Almodiel - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Lord Hendrix Barboza - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Jeffrey Detras - International Rice Research Institute
Kevin Manansala - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Michael Jonathan Mendoza - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Jeffrey Morales - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Barry Peralta - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Rowena Valerio - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Yi Zhang - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Sergio Gregorio - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines, Institute of Computer Science, College of Arts and Sciences, University of the Philippines, Los Baños, Laguna 4031, Philippines
Joseph Hermocilla - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines, Institute of Computer Science, College of Arts and Sciences, University of the Philippines, Los Baños, Laguna 4031, Philippines
Michael Echavez - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines, Department of Computer Science, University of the Philippines, Room 215, Melchor Hall, Diliman, Quezon City 1101, Philippines
Jan Michael Yap - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines, Department of Computer Science, University of the Philippines, Room 215, Melchor Hall, Diliman, Quezon City 1101, Philippines
Andrew Farmer - National Center for Genome Resources, 2935 Rodeo Park Drive East, Santa Fe, NM 87505, USA
Gary Schiltz - National Center for Genome Resources, 2935 Rodeo Park Drive East, Santa Fe, NM 87505, USA
Jennifer Lee - Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, Scotland, UK
Terry Casstevens - Cornell University
Pankaj Jaiswal - Cornell University
Ayton Meintjes - African Centre for Gene Technologies, P.O. Box 75011, Lynnwood Ridge 0040, South Africa
Mark Wilkinson - Department of Medical Genetics, Faculty of Medicine, The University of British Columbia, Vancouver, BC, Canada V6T 1Z3
Benjamin Good - School of Computing Science, Simon Fraser Universtiy, 8888 University Drive, Burnaby, BC, Canada V5A 1S6, Bioinformatics Graduate Program, Genome Sciences Centre, BC Cancer Agency, 100-570 West 7th Avenue, Vancouver, BC, Canada V5Z 4S6
James Wagner - School of Computing Science, Simon Fraser Universtiy, 8888 University Drive, Burnaby, BC, Canada V5A 1S6, Bioinformatics Graduate Program, Genome Sciences Centre, BC Cancer Agency, 100-570 West 7th Avenue, Vancouver, BC, Canada V5Z 4S6
Jane Morris - African Centre for Gene Technologies, P.O. Box 75011, Lynnwood Ridge 0040, South Africa
David Marshall - Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, Scotland, UK
Anthony Collins - Centro Internacional de la Papa (CIP), Avenida La Molina 1895, La Molina, Apartado Postal 1558, Lima 12, Peru
Shoshi Kikuchi - National Institute for Agrobiological Sciences (NIAS), Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
Thomas Metz - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Graham McLaren - Crop Research Informatics Laboratory, International Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines
Theo van Hintum - Centre for Genetic Resources, The Netherlands (CGN), P.O. Box 16, Wageningen 6700 AA, The Netherlands
Détails de publication: International journal of plant genomics, Vol.2008(2008), pp.1-6
Nombre de pages: 6
Identifiants: 99163937409311
Unité académique: Institut Amélioration Génétique & Adaptation des Plantes méditerranéennes & tropicales-AGAP
Langue: English
Type de ressource: Journal article