The Draft Genome of Ciona intestinalis : Insights into Chordate and Vertebrate Origins

Paramvir Dehal; Yutaka Satou; Robert K. Campbell; Jarrod Chapman; Bernard Degnan; Anthony De Tomaso; Brad Davidson; Anna Di Gregorio; Maarten Gelpke; David M. Goodstein; Naoe Harafuji; Kenneth E. M. Hastings; Isaac Ho; Kohji Hotta; Wayne Huang; Takeshi Kawashima; Patrick Lemaire; Diego Martinez; Ian A. Meinertzhagen; Simona Necula; Masaru Nonaka; Nik Putnam; Sam Rash; Hidetoshi Saiga; Masanobu Satake; Astrid Terry; Lixy Yamada; Hong-Gang Wang; Satoko Awazu; Kaoru Azumi; Jeffrey Boore; Margherita Branno; Stephen Chin-bow; Rosaria DeSantis; Sharon Doyle; Pilar Francino; David N. Keys; Shinobu Haga; Hiroko Hayashi; Kyosuke Hino; Kaoru S. Imai; Kazuo Inaba; Shungo Kano; Kenji Kobayashi; Mari Kobayashi; Byung-In Lee; Kazuhiro W. Makabe; Chitra Manohar; Giorgio Matassi; Monica Medina; Yasuaki Mochizuki; Steve Mount; Tomomi Morishita; Sachiko Miura; Akie Nakayama; Satoko Nishizaka; Hisayo Nomoto; Fumiko Ohta; Kazuko Oishi; Isidore Rigoutsos; Masako Sano; Akane Sasaki; Yasunori Sasakura; Eiichi Shoguchi; Tadasu Shin-i; Antoinetta Spagnuolo; Didier Stainier; Miho M. Suzuki; Olivier Tassy; Naohito Takatori; Miki Tokuoka; Kasumi Yagi; Fumiko Yoshizaki; Shuichi Wada; Cindy Zhang; P. Douglas Hyatt; Frank Larimer; Chris Detter; Norman Doggett; Tijana Glavina; Trevor Hawkins; Paul Richardson; Susan Lucas; Yuji Kohara; Michael Levine; Nori Satoh; Daniel S. Rokhsar; Joint Genome Institute (JGI)

doi:10.1126/science.1080049

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The Draft Genome of Ciona intestinalis : Insights into Chordate and Vertebrate Origins

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The Draft Genome of Ciona intestinalis : Insights into Chordate and Vertebrate Origins

Paramvir Dehal, Yutaka Satou, Robert K. Campbell, Jarrod Chapman, Bernard Degnan, Anthony De Tomaso, Brad Davidson, Anna Di Gregorio, Maarten Gelpke, David M. Goodstein, …

Science (American Association for the Advancement of Science), Vol.298(5601), pp.2157-2167

13/12/2002

DOI: https://doi.org/10.1126/science.1080049

PMID: 12481130

Résumé

The first chordates appear in the fossil record at the time of the Cambrian explosion, nearly 550 million years ago. The modern ascidian tadpole represents a plausible approximation to these ancestral chordates. To illuminate the origins of chordate and vertebrates, we generated a draft of the protein-coding portion of the genome of the most studied ascidian, Ciona intestinalis . The Ciona genome contains ∼16,000 protein-coding genes, similar to the number in other invertebrates, but only half that found in vertebrates. Vertebrate gene families are typically found in simplified form in Ciona , suggesting that ascidians contain the basic ancestral complement of genes involved in cell signaling and development. The ascidian genome has also acquired a number of lineage-specific innovations, including a group of genes engaged in cellulose metabolism that are related to those in bacteria and fungi.

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Titre: The Draft Genome of Ciona intestinalis : Insights into Chordate and Vertebrate Origins
Créateurs - sans rôle: Paramvir Dehal - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Yutaka Satou - Kyoto University
Robert K. Campbell - Marine Biological Laboratories, Woods Hole, MA 02543, USA., Serono Reproductive Biology Institute, One Technology Place, Rockland, MA 02370, USA
Jarrod Chapman - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Bernard Degnan - The University of Queensland
Anthony De Tomaso - Department of Pathology, Stanford University School of Medicine, Stanford, CA 93950, USA
Brad Davidson - Department of Molecular and Cellular Biology, Division of Genetics, 401 Barker Hall, University of California, Berkeley, CA 94720, USA
Anna Di Gregorio - University of California, Berkeley
Maarten Gelpke - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
David M. Goodstein - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Naoe Harafuji - Department of Molecular and Cellular Biology, Division of Genetics, 401 Barker Hall, University of California, Berkeley, CA 94720, USA
Kenneth E. M. Hastings - Montreal Neurological Institute, McGill University, Montreal, H3A 2T5, Canada
Isaac Ho - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Kohji Hotta - National Institute of Genetics, Mishima 411-8540, Japan
Wayne Huang - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Takeshi Kawashima - Bioinformatics Center, Institute for Chemical Research, Kyoto Univeristy, Uji, Kyoto 611-0011, Japan
Patrick Lemaire - LGPD, IBDM, Case 907, Campus de Luminy, F-13288 Marseille Cedex 09, France
Diego Martinez - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Ian A. Meinertzhagen - Life Sciences Centre, Dalhousie University, Halifax, Nova Scotia, B3H 4J1, Canada
Simona Necula - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Masaru Nonaka - Department of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo 113-0033, Japan
Nik Putnam - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Sam Rash - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Hidetoshi Saiga - Department of Biological Sciences, Graduate School of Science, Tokyo Metropolitan University, Hachiohji, Tokyo 192-0397, Japan
Masanobu Satake - Department of Molecular Immunology, Institute of Development, Aging and Cancer, Tohoku University, Seiryo-machi, Aoba-ku, Sendai 980-8575, Japan
Astrid Terry - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Lixy Yamada - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Hong-Gang Wang - Drug Discovery Program, Moffitt Cancer Center, 12902 Magnolia Drive, Tampa, FL 33612, USA
Satoko Awazu - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Kaoru Azumi - Department of Biochemistry, Graduate School of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan
Jeffrey Boore - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Margherita Branno - Stazione Zoologica “Anton Dohrn,” Villa Comunale, 80121 Napoli, Italy
Stephen Chin-bow - IBM Watson Research Center, Post Office Box 218, Yorktown Heights, NY 10598, USA
Rosaria DeSantis - Stazione Zoologica “Anton Dohrn,” Villa Comunale, 80121 Napoli, Italy
Sharon Doyle - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Pilar Francino - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
David N. Keys - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA., Department of Molecular and Cellular Biology, Division of Genetics, 401 Barker Hall, University of California, Berkeley, CA 94720, USA
Shinobu Haga - National Institute of Genetics, Mishima 411-8540, Japan
Hiroko Hayashi - National Institute of Genetics, Mishima 411-8540, Japan
Kyosuke Hino - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Kaoru S. Imai - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Kazuo Inaba - Asamushi Marine Biological Station, Graduate School of Science, Tohoku University, Asamushi, Aomori 039-3501, Japan
Shungo Kano - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan., Stazione Zoologica “Anton Dohrn,” Villa Comunale, 80121 Napoli, Italy
Kenji Kobayashi - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Mari Kobayashi - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Byung-In Lee - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Kazuhiro W. Makabe - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Chitra Manohar - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Giorgio Matassi - Stazione Zoologica “Anton Dohrn,” Villa Comunale, 80121 Napoli, Italy
Monica Medina - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Yasuaki Mochizuki - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Steve Mount - University of Maryland, College Park, MD 20742, USA
Tomomi Morishita - National Institute of Genetics, Mishima 411-8540, Japan
Sachiko Miura - National Institute of Genetics, Mishima 411-8540, Japan
Akie Nakayama - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Satoko Nishizaka - National Institute of Genetics, Mishima 411-8540, Japan
Hisayo Nomoto - National Institute of Genetics, Mishima 411-8540, Japan
Fumiko Ohta - National Institute of Genetics, Mishima 411-8540, Japan
Kazuko Oishi - National Institute of Genetics, Mishima 411-8540, Japan
Isidore Rigoutsos - IBM Watson Research Center, Post Office Box 218, Yorktown Heights, NY 10598, USA
Masako Sano - National Institute of Genetics, Mishima 411-8540, Japan
Akane Sasaki - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Yasunori Sasakura - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Eiichi Shoguchi - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Tadasu Shin-i - National Institute of Genetics, Mishima 411-8540, Japan
Antoinetta Spagnuolo - Stazione Zoologica “Anton Dohrn,” Villa Comunale, 80121 Napoli, Italy
Didier Stainier - Department of Biochemistry and Biophysics, Programs in Developmental Biology, Genetics, and Human Genetics, University of California, San Francisco, CA 94143, USA
Miho M. Suzuki - Wellcome Trust Centre for Cell Biology, Institute of Cell and Molecular Biology, University of Edinburgh, Edinburgh EH9 3JR, UK
Olivier Tassy - LGPD, IBDM, Case 907, Campus de Luminy, F-13288 Marseille Cedex 09, France
Naohito Takatori - Kyoto University
Miki Tokuoka - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Kasumi Yagi - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Fumiko Yoshizaki - Department of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo 113-0033, Japan
Shuichi Wada - Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
Cindy Zhang - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
P. Douglas Hyatt - Oak Ridge National Laboratory, Post Office Box 2008, Oak Ridge, TN 37831, USA
Frank Larimer - Oak Ridge National Laboratory, Post Office Box 2008, Oak Ridge, TN 37831, USA
Chris Detter - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Norman Doggett - Los Alamos National Laboratory, Los Alamos, NM 87545, USA
Tijana Glavina - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Trevor Hawkins - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Paul Richardson - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Susan Lucas - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Yuji Kohara - National Institute of Genetics
Michael Levine - University of California, Berkeley
Nori Satoh - Kyoto University
Daniel S. Rokhsar - U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA., Department of Molecular and Cellular Biology, Division of Genetics, 401 Barker Hall, University of California, Berkeley, CA 94720, USA., Center for Integrative Genomics, University of California, Berkeley 94720, USA
Joint Genome Institute (JGI)
Détails de publication: Science (American Association for the Advancement of Science), Vol.298(5601), pp.2157-2167
Nombre de pages: 11
Identifiants: 99136604709311
Unité académique: Centre de Recherche en Biologie Cellulaire de Montpellier - CRBM
Langue: English
Type de ressource: Journal article