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SeqTUI: A terminal-based viewer and command-line toolkit for molecular sequences
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SeqTUI: A terminal-based viewer and command-line toolkit for molecular sequences

Vincent Ranwez
SoftwareX, Vol.34
06/2026

Résumé

FASTA Bioinformatics Sequences Alignment Terminal TUI Rust molecular sequence data bioinformatics SNP single-nucleotide polymorphism open source software sequence alignment data set Jeu de données computer server software pipelining amino acid sequence nucleotide sequence nucleic acid sequence base sequence protein translation genetic code

Large molecular sequence datasets are often processed on remote servers and within command-line pipelines, where using graphical viewers is inconvenient. SeqTUI provides a fast terminal-based viewer coupled with a command-line toolkit for routine operations on nucleotide and amino-acid sequences. The interactive mode supports intuitive arrow-key navigation and optional Vim-style shortcuts, along with search and on-the-fly trans lations, while remaining responsive on large alignments. The command-line mode emphasizes Unix composability (stdin/stdout) for format conversion, translation across NCBI genetic codes, concatenation/supermatrix construction, and SNP extraction. SeqTUI is implemented in Rust and released as open-source software under the MIT License.

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