Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

Maximilian Griesmann; Yue Chang; Xin Liu; Yue Song; Georg Haberer; Matthew B Crook; Benjamin Billault-Penneteau; Dominique Lauressergues; Jean Keller; Leandro Imanishi; Yuda Purwana Roswanjaya; Wouter Kohlen; Petar Pujic; Kai Battenberg; Nicole Alloisio; Yuhu Liang; Henk Hilhorst; Marco G Salgado; Valerie Hocher; Hassen Gherbi; Sergio Svistoonoff; Jeff J Doyle; Shixu He; Yan Xu; Shanyun Xu; Jing Qu; Qiang Gao; Xiaodong Fang; Yuan Fu; Philippe Normand; Alison M Berry; Luis G Wall; Jean-Michel Ané; Katharina Pawlowski; Xun Xu; Huanming Yang; Manuel Spannagl; Klaus F X Mayer; Gane Ka-Shu Wong; Martin Parniske; Pierre-Marc Delaux; Shifeng Cheng

doi:10.1126/science.aat1743

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Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

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Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

Maximilian Griesmann, Yue Chang, Xin Liu, Yue Song, Georg Haberer, Matthew B Crook, Benjamin Billault-Penneteau, Dominique Lauressergues, Jean Keller, Leandro Imanishi, …

Science (American Association for the Advancement of Science), Vol.361(6398), eaat1743

13/07/2018

DOI: https://doi.org/10.1126/science.aat1743

PMID: 29794220

Résumé

Bacterial Physiological Phenomena

Evolution, Molecular

Fabaceae - classification

Fabaceae - genetics

Fabaceae - microbiology

Genome, Plant

Genomics

Nitrogen - metabolism

Nitrogen Fixation

Phylogeny

Root Nodules, Plant - microbiology

Symbiosis

The root nodule symbiosis of plants with nitrogen-fixing bacteria affects global nitrogen cycles and food production but is restricted to a subset of genera within a single clade of flowering plants. To explore the genetic basis for this scattered occurrence, we sequenced the genomes of 10 plant species covering the diversity of nodule morphotypes, bacterial symbionts, and infection strategies. In a genome-wide comparative analysis of a total of 37 plant species, we discovered signatures of multiple independent loss-of-function events in the indispensable symbiotic regulator in 10 of 13 genomes of nonnodulating species within this clade. The discovery that multiple independent losses shaped the present-day distribution of nitrogen-fixing root nodule symbiosis in plants reveals a phylogenetically wider distribution in evolutionary history and a so-far-underestimated selection pressure against this symbiosis.

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Titre: Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis
Créateurs - sans rôle: Maximilian Griesmann - Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich-German Research Center for Environmental Health, 85764 Neuherberg, Germany
Yue Chang - China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China
Xin Liu - China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China
Yue Song - China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China
Georg Haberer - Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich-German Research Center for Environmental Health, 85764 Neuherberg, Germany
Matthew B Crook - Department of Microbiology, Weber State University, Ogden, UT 84408-2506, USA
Benjamin Billault-Penneteau - Faculty of Biology, Genetics, LMU Munich, Großhaderner Strasse 2-4, 82152 Martinsried, Germany
Dominique Lauressergues - Laboratoire de Recherche en Sciences Végétales (LRSV), Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, Auzeville, BP42617, 31326 Castanet Tolosan, France
Jean Keller - Laboratoire de Recherche en Sciences Végétales (LRSV), Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, Auzeville, BP42617, 31326 Castanet Tolosan, France
Leandro Imanishi - LBMIBS, Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, CONICET, R. Saénz Peña 352, B1876BXD Bernal, Argentina
Yuda Purwana Roswanjaya - Laboratory for Molecular Biology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, Netherlands
Wouter Kohlen - Laboratory for Molecular Biology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, Netherlands
Petar Pujic - Université Lyon 1, Université de Lyon, CNRS, Ecologie Microbienne, UMR 5557, Villeurbanne, 69622 Cedex, France
Kai Battenberg - University of California, Davis
Nicole Alloisio - Université Lyon 1, Université de Lyon, CNRS, Ecologie Microbienne, UMR 5557, Villeurbanne, 69622 Cedex, France
Yuhu Liang - China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China
Henk Hilhorst - Laboratory for Plant Physiology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, Netherlands
Marco G Salgado - Department of Ecology, Environment and Plant Sciences, Stockholm University, 106 91 Stockholm, Sweden
Valerie Hocher - French National Research Institute for Sustainable Development (IRD), UMR LSTM (IRD-INRA-CIRAD-Université Montpellier-Supagro), Campus International de Baillarguet, TA A-82/J, 34398, Montpellier Cedex 5, France
Hassen Gherbi - French National Research Institute for Sustainable Development (IRD), UMR LSTM (IRD-INRA-CIRAD-Université Montpellier-Supagro), Campus International de Baillarguet, TA A-82/J, 34398, Montpellier Cedex 5, France
Sergio Svistoonoff - French National Research Institute for Sustainable Development (IRD), UMR LSTM (IRD-INRA-CIRAD-Université Montpellier-Supagro), Campus International de Baillarguet, TA A-82/J, 34398, Montpellier Cedex 5, France
Jeff J Doyle - Section of Plant Breeding and Genetics, School of Integrated Plant Science, Cornell University, Ithaca, NY 14853, USA
Shixu He - China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China
Yan Xu - China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China
Shanyun Xu - China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China
Jing Qu - China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China
Qiang Gao - BGI Genomics
Xiaodong Fang - BGI Genomics, BGI-Shenzhen, Shenzhen 518083, China
Yuan Fu - China National GeneBank
Philippe Normand - Université Lyon 1, Université de Lyon, CNRS, Ecologie Microbienne, UMR 5557, Villeurbanne, 69622 Cedex, France
Alison M Berry - University of California, Davis
Luis G Wall - LBMIBS, Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, CONICET, R. Saénz Peña 352, B1876BXD Bernal, Argentina
Jean-Michel Ané - Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706, USA
Katharina Pawlowski - Department of Ecology, Environment and Plant Sciences, Stockholm University, 106 91 Stockholm, Sweden
Xun Xu - China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China
Huanming Yang - James D. Watson Institute of Genome Sciences, Hangzhou 310058, China
Manuel Spannagl - Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich-German Research Center for Environmental Health, 85764 Neuherberg, Germany
Klaus F X Mayer - TUM School of Life Sciences Weihenstephan, Technical University of Munich, 85354 Freising, Germany
Gane Ka-Shu Wong - University of Alberta
Martin Parniske - Faculty of Biology, Genetics, LMU Munich, Großhaderner Strasse 2-4, 82152 Martinsried, Germany. chengshf@genomics.cn pierre-marc.delaux@lrsv.ups-tlse.fr parniske@lmu.de
Pierre-Marc Delaux - Laboratoire de Recherche en Sciences Végétales (LRSV), Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, Auzeville, BP42617, 31326 Castanet Tolosan, France. chengshf@genomics.cn pierre-marc.delaux@lrsv.ups-tlse.fr parniske@lmu.de
Shifeng Cheng - China National GeneBank
Détails de publication: Science (American Association for the Advancement of Science), Vol.361(6398), eaat1743
Identifiants: 99148126209311
Unité académique: Plant Health Institute of Montpellier - PHIM
Langue: English
Type de ressource: Journal article