Phylogenomic analyses data of the avian phylogenomics project

Erich Jarvis; Siavash Mirarab; Andre J Aberer; Bo Li; Peter Houde; Cai Li; Simon Y.W. Ho; Brant C Faircloth; Benoit Nabholz; Jason Howard; Alexander Suh; Claudia C Weber; Rute R da Fonseca; Alonzo Alfaro-Núñez; Nitish Narula; Liang Liu; Dave Burt; Hans Ellegren; Scott Edwards; Alexandros Stamatakis; David P Mindell; Joël Cracraft; Edward L Braun; Tandy Warnow; Wang Jun; M Thomas Pius Thomas Pius Gilbert; Guojie Zhang

doi:10.1186/s13742-014-0038-1

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Phylogenomic analyses data of the avian phylogenomics project

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Open Access

Phylogenomic analyses data of the avian phylogenomics project

Erich Jarvis, Siavash Mirarab, Andre J Aberer, Bo Li, Peter Houde, Cai Li, Simon Y.W. Ho, Brant C Faircloth, Benoit Nabholz, Jason Howard, …

GigaScience, Vol.4(1), pp.1-9

01/12/2015

DOI: https://doi.org/10.1186/s13742-014-0038-1

PMID: 25741440

Résumé

sequence alignment

species tree

transposable element

phylogenomic

gene trees

avian genome

indels

Background: Determining the evolutionary relationships among the major lineages of extant birds has been one of the biggest challenges in systematic biology. To address this challenge, we assembled or collected the genomes of 48 avian species spanning most orders of birds, including all Neognathae and two of the five Palaeognathae orders. We used these genomes to construct a genome-scale avian phylogenetic tree and perform comparative genomic analyses.

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Titre: Phylogenomic analyses data of the avian phylogenomics project
Créateurs - sans rôle: Erich Jarvis - Howard Hughes Medical Institute
Siavash Mirarab - Computer Science Department [Austin]
Andre J Aberer - Heidelberg Institute for Theoretical Studies
Bo Li - China National GeneBank
Peter Houde - New Mexico State University
Cai Li - China National GeneBank
Simon Y.W. Ho - School of Biological Sciences [Sydney]
Brant C Faircloth - Department of Ecology and Evolutionary Biology; University of California
Benoit Nabholz - Université de Montpellier, Institut des Sciences de l'Evolution - Montpellier - ISEM
Jason Howard - Howard Hughes Medical Institute
Alexander Suh - Uppsala University
Claudia C Weber - Uppsala University
Rute R da Fonseca - Uppsala University
Alonzo Alfaro-Núñez - Section for GeoGenetics
Nitish Narula - New Mexico State University
Liang Liu - University of Georgia [USA]
Dave Burt - Roslin Institute
Hans Ellegren - Uppsala University
Scott Edwards - Organismic and Evolutionary Biology, Harvard
Alexandros Stamatakis - Heidelberg Institute for Theoretical Studies
David P Mindell - University of California [San Francisco]
Joël Cracraft - American Museum of Natural History [New York, USA] = Musée américain d'histoire naturelle [New York, USA]
Edward L Braun - University of Florida
Tandy Warnow - The University of Texas at Austin
Wang Jun - China National GeneBank
M Thomas Pius Thomas Pius Gilbert - Section for GeoGenetics
Guojie Zhang - China National GeneBank
Détails de publication: GigaScience, Vol.4(1), pp.1-9
Identifiants: 99151489409311
Unité académique: Institut des Sciences de l'Evolution - Montpellier - ISEM
Langue: English
Type de ressource: Journal article
Champs locaux: hal-01919658