Out of Southern East Asia of the Brown Rat Revealed by Large-Scale Genome Sequencing

Lin Zeng; Chen Ming; Yan Li; Ling-Yan Su; Yan-Hua Su; Newton O. Otecko; Ambroise Dalecky; Stephen Donnellan; Ken Aplin; Xiao-Hui Liu; Ying Song; Zhi-Bin Zhang; Ali Esmailizadeh; Saeed S. Sohrabi; Hojjat Asadollahpour Nanaei; He-Qun Liu; Ming-Shan Wang; Solimane Ag Atteynine; Gérard Rocamora; Fabrice Brescia; Serge Morand; David M. Irwin; Ming-Sheng Peng; Yong-Gang Yao; Hai-Peng Li; Dong-Dong Wu; Ya-Ping Zhang

doi:10.1093/molbev/msx276

Retour

Out of Southern East Asia of the Brown Rat Revealed by Large-Scale Genome Sequencing

Article de revue

Avec comité de lecture

Out of Southern East Asia of the Brown Rat Revealed by Large-Scale Genome Sequencing

Lin Zeng, Chen Ming, Yan Li, Ling-Yan Su, Yan-Hua Su, Newton O. Otecko, Ambroise Dalecky, Stephen Donnellan, Ken Aplin, Xiao-Hui Liu, …

Molecular Biology and Evolution, Vol.35(1), pp.149-158

01/2018

DOI: https://doi.org/10.1093/molbev/msx276

PMID: 29087519

Résumé

natural selection

demographic history

origin

Rattus norvegicus

The geographic origin and migration of the brown rat (Rattus norvegicus) remain subjects of considerable debate. In this study, we sequenced whole genomes of 110 wild brown rats with a diverse world-wide representation. We reveal that brown rats migrated out of southern East Asia, rather than northern Asia as formerly suggested, into the Middle East and then to Europe and Africa, thousands of years ago. Comparison of genomes from different geographical populations reveals that many genes involved in the immune system experienced positive selection in the wild brown rat.

Fichiers et liens (2)

url

Find in HALAfficher

url

https://doi.org/10.1093/molbev/msx276Afficher

Published (Version of record) Ouvrir

Indicateurs

1 Consultations de la notice

See more details

Détails

Titre: Out of Southern East Asia of the Brown Rat Revealed by Large-Scale Genome Sequencing
Créateurs - sans rôle: Lin Zeng - State Key Laboratory of Genetic Resources and Evolution
Chen Ming - CAS-MPG Partner Institute for Computational Biology
Yan Li - Yunnan Agricultural University
Ling-Yan Su - Kunming Institute of Zoology
Yan-Hua Su - Yunnan Agricultural University
Newton O. Otecko - Kunming Institute of Zoology
Ambroise Dalecky - Laboratoire Population Environnement Développement
Stephen Donnellan - The University of Adelaide
Ken Aplin - Smithsonian Institution
Xiao-Hui Liu - Plant
Ying Song - State Key Laboratory of Biology of Plant Diseases and Insect Pests
Zhi-Bin Zhang - Institute of Zoology [Beijing]
Ali Esmailizadeh - Shahid Bahonar University of Kerman
Saeed S. Sohrabi - Shahid Bahonar University of Kerman
Hojjat Asadollahpour Nanaei - Shahid Bahonar University of Kerman
He-Qun Liu - Kunming Institute of Zoology
Ming-Shan Wang - Kunming Institute of Zoology
Solimane Ag Atteynine - Institut Méditerranéen de Biodiversité et d'Ecologie Marine et Continentale
Gérard Rocamora - University of Seychelles
Fabrice Brescia - University of New Caledonia
Serge Morand - Centre d’Infectiologie Christophe Mérieux of Laos
David M. Irwin - University of Toronto
Ming-Sheng Peng - Kunming Institute of Zoology
Yong-Gang Yao - Kunming Institute of Zoology
Hai-Peng Li - CAS-MPG Partner Institute for Computational Biology
Dong-Dong Wu - Kunming Institute of Zoology
Ya-Ping Zhang - Kunming Institute of Zoology
Détails de publication: Molecular Biology and Evolution, Vol.35(1), pp.149-158
Note de subvention: This work was supported by the Strategic Priority Research Program of the Chinese Academy of Sciences, Grant No XDB13020600, and the National Natural Science Foundation of China (91731304). N.O.O. thanks the support of CAS-TWAS President's Fellowship Program for Doctoral Candidates.
Identifiants: 99153620009311
Unité académique: Université de Montpellier
Langue: English
Type de ressource: Journal article
Champs locaux: hal-02627003