Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications

Alessandro Rigano; Shannon Ehmsen; Serkan Utku Öztürk; Joel Ryan; Alexander Balashov; Mathias Hammer; Koray Kirli; Ulrike Boehm; Claire M Brown; Karl Bellve; James J Chambers; Andrea Cosolo; Robert A Coleman; Orestis Faklaris; Kevin E Fogarty; Thomas Guilbert; Anna B Hamacher; Michelle S Itano; Daniel P Keeley; Susanne Kunis; Judith Lacoste; Alex Laude; Willa Y Ma; Marco Marcello; Paula Montero-Llopis; Glyn Nelson; Roland Nitschke; Jaime A Pimentel; Stefanie Weidtkamp-Peters; Peter J Park; Burak H Alver; David Grunwald; Caterina Strambio-De-Castillia

doi:10.1038/s41592-021-01315-z

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Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications

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Open Access

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Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications

Alessandro Rigano, Shannon Ehmsen, Serkan Utku Öztürk, Joel Ryan, Alexander Balashov, Mathias Hammer, Koray Kirli, Ulrike Boehm, Claire M Brown, Karl Bellve, …

Nature Methods, Vol.18(12), pp.1489-1495

2021

DOI: https://doi.org/10.1038/s41592-021-01315-z

PMID: 34862503

Résumé

For quality, interpretation, reproducibility and sharing value, microscopy images should be accompanied by detailed descriptions of the conditions that were used to produce them. Micro-Meta App is an intuitive, highly interoperable, open-source software tool that was developed in the context of the 4D Nucleome (4DN) consortium and is designed to facilitate the extraction and collection of relevant microscopy metadata as specified by the recent 4DN-BINA-OME tiered-system of Microscopy Metadata specifications. In addition to substantially lowering the burden of quality assurance, the visual nature of Micro-Meta App makes it particularly suited for training purposes.

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Détails

Titre: Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications
Créateurs - sans rôle: Alessandro Rigano - University of Massachusetts Chan Medical School
Shannon Ehmsen - Harvard University
Serkan Utku Öztürk - Harvard University
Joel Ryan - McGill University
Alexander Balashov - Harvard University
Mathias Hammer - University of Massachusetts Chan Medical School
Koray Kirli
Ulrike Boehm - Howard Hughes Medical Institute
Claire M Brown - McGill University
Karl Bellve - University of Massachusetts Chan Medical School
James J Chambers - University of Massachusetts Amherst
Andrea Cosolo - Harvard University
Robert A Coleman - Albert Einstein College of Medicine
Orestis Faklaris - Université de Montpellier, BioCampus Montpellier - BCM
Kevin E Fogarty - University of Massachusetts Chan Medical School
Thomas Guilbert - Centre National de la Recherche Scientifique
Anna B Hamacher - Heinrich Heine University Düsseldorf
Michelle S Itano
Daniel P Keeley
Susanne Kunis - Osnabrück University
Judith Lacoste
Alex Laude - Newcastle University
Willa Y Ma
Marco Marcello - University of Liverpool
Paula Montero-Llopis
Glyn Nelson - Newcastle University
Roland Nitschke - University of Freiburg
Jaime A Pimentel - Universidad Nacional Autónoma de México
Stefanie Weidtkamp-Peters - Heinrich Heine University Düsseldorf
Peter J Park - Harvard University
Burak H Alver - Harvard University
David Grunwald - University of Massachusetts Chan Medical School
Caterina Strambio-De-Castillia - University of Massachusetts Chan Medical School
Détails de publication: Nature Methods, Vol.18(12), pp.1489-1495
Identifiants: 99123173409311
Unité académique: BioCampus Montpellier - BCM
Langue: English
Type de ressource: Journal article
Champs locaux: hal-05345763