International Society of Human and Animal Mycology (ISHAM)-ITS reference DNA barcoding database-the quality controlled standard tool for routine identification of human and animal pathogenic fungi

Laszlo Irinyi; Carolina Serena; Dea Garcia-Hermoso; Michael Arabatzis; Marie Desnos-Ollivier; Duong Vu; Gianluigi Cardinali; Ian Arthur; Anne-Cecile Normand; Alejandra Giraldo; Keith Cassia da Cunha; Marcelo Sandoval-Denis; Marijke Hendrickx; Angela Satie Nishikaku; Analy Salles de Azevedo Melo; Karina Bellinghausen Merseguel; Aziza Khan; Juliana Alves Parente Rocha; Paula Sampaio; Marcelo Ribeiro da Silva Briones; Renata Carmona e Ferreira; Mauro de Medeiros Muniz; Laura Rosio Castanon-Olivares; Daniel Estrada-Barcenas; Carole Cassagne; Charles Mary; Shu Yao Duan; Fanrong Kong; Annie Ying Sun; Xianyu Zeng; Zuotao Zhao; Nausicaa Gantois; Francoise Botterel; Barbara Robbertse; Conrad Schoch; Walter Gams; David Ellis; Catriona Halliday; Sharon Chen; Tania C. Sorrell; Renaud Piarroux; Arnaldo L. Colombo; Celia Pais; Sybren de Hoog; Rosely Maria Zancope-Oliveira; Maria Lucia Taylor; Conchita Toriello; Celia Maria de Almeida Soares; Laurence Delhaes; Dirk Stubbe; Francoise Dromer; Stephane Ranque; Josep Guarro; Jose F. Cano-Lira; Vincent Robert; Aristea Velegraki; Wieland Meyer

doi:10.1093/mmy/myv008

Retour

International Society of Human and Animal Mycology (ISHAM)-ITS reference DNA barcoding database-the quality controlled standard tool for routine identification of human and animal pathogenic fungi

Article de revue

Avec comité de lecture

International Society of Human and Animal Mycology (ISHAM)-ITS reference DNA barcoding database-the quality controlled standard tool for routine identification of human and animal pathogenic fungi

Laszlo Irinyi, Carolina Serena, Dea Garcia-Hermoso, Michael Arabatzis, Marie Desnos-Ollivier, Duong Vu, Gianluigi Cardinali, Ian Arthur, Anne-Cecile Normand, Alejandra Giraldo, …

Medical mycology (Oxford), Vol.53(4), pp.313-337

01/05/2015

DOI: https://doi.org/10.1093/mmy/myv008

PMID: 25802363

Résumé

Infectious Diseases

Life Sciences & Biomedicine

Mycology

Science & Technology

Veterinary Sciences

Human and animal fungal pathogens are a growing threat worldwide leading to emerging infections and creating new risks for established ones. There is a growing need for a rapid and accurate identification of pathogens to enable early diagnosis and targeted antifungal therapy. Morphological and biochemical identification methods are time-consuming and require trained experts. Alternatively, molecular methods, such as DNA barcoding, a powerful and easy tool for rapid monophasic identification, offer a practical approach for species identification and less demanding in terms of taxonomical expertise. However, its wide-spread use is still limited by a lack of quality-controlled reference databases and the evolving recognition and definition of new fungal species/complexes. An international consortium of medical mycology laboratories was formed aiming to establish a quality controlled ITS database under the umbrella of the ISHAM working group on "DNA barcoding of human and animal pathogenic fungi." A new database, containing 2800 ITS sequences representing 421 fungal species, providing the medical community with a freely accessible tool at http://www.isham.org and http://its.mycologylab.org/ to rapidly and reliably identify most agents of mycoses, was established. The generated sequences included in the new database were used to evaluate the variation and overall utility of the ITS region for the identification of pathogenic fungi at intra-and interspecies level. The average intraspecies variation ranged from 0 to 2.25%. This highlighted selected pathogenic fungal species, such as the dermatophytes and emerging yeast, for which additional molecular methods/genetic markers are required for their reliable identification from clinical and veterinary specimens.

Indicateurs

1 Consultations de la notice

See more details

Détails

Titre: International Society of Human and Animal Mycology (ISHAM)-ITS reference DNA barcoding database-the quality controlled standard tool for routine identification of human and animal pathogenic fungi
Créateurs - sans rôle: Laszlo Irinyi - Univ Sydney, Marie Bashir Inst Infect Dis & Bioscur, Ctr Infect Dis & Microbiol,Westmead Hosp, Mol Mycol Res Lab,Sydney Med Sch,Westmead Millenn, Sydney, NSW 2006, Australia
Carolina Serena - Univ Sydney, Marie Bashir Inst Infect Dis & Bioscur, Ctr Infect Dis & Microbiol,Westmead Hosp, Mol Mycol Res Lab,Sydney Med Sch,Westmead Millenn, Sydney, NSW 2006, Australia
Dea Garcia-Hermoso - CNRS, Inst Pasteur, Natl Reference Ctr Invas Mycoses & Antifungals, Mol Mycol Unit,URA3012, Paris, France
Michael Arabatzis - Natl & Kapodistrian Univ Athens, Univ Athens Hellen Collect Pathogen Fungi UOA HCP, Sch Med, Mycol Res Lab,Dept Microbiol, Athens 11528, Greece
Marie Desnos-Ollivier - CNRS, Inst Pasteur, Natl Reference Ctr Invas Mycoses & Antifungals, Mol Mycol Unit,URA3012, Paris, France
Duong Vu - CBS KNAW, Fungal Biodivers Ctr, Utrecht, Netherlands
Gianluigi Cardinali - Univ Perugia, Dept Pharmaceut Sci, I-06100 Perugia, Italy
Ian Arthur - QEII Med Ctr, PathWest Lab Med WA, Dept Microbiol & Infect Dis, Mycol Lab, Nedlands, WA, Australia
Anne-Cecile Normand - CHU Timone Adultes, APHM, Parasitol Mycol, Marseille, France
Alejandra Giraldo - Univ Rovira & Virgili, IISPV, Fac Med & Ciencies Salut, Unitat Microbiol, E-43201 Reus, Spain
Keith Cassia da Cunha - Univ Rovira & Virgili, IISPV, Fac Med & Ciencies Salut, Unitat Microbiol, E-43201 Reus, Spain
Marcelo Sandoval-Denis - Univ Rovira & Virgili, IISPV, Fac Med & Ciencies Salut, Unitat Microbiol, E-43201 Reus, Spain
Marijke Hendrickx - Sci Inst Publ Hlth, Biomed Fungi & Yeasts Collect, BCCM IHEM, Brussels, Belgium
Angela Satie Nishikaku - Univ Fed Sao Paulo, Escola Paulista Med, Lab Especial Micol, Sao Paulo, Brazil
Analy Salles de Azevedo Melo - Univ Fed Sao Paulo, Escola Paulista Med, Lab Especial Micol, Sao Paulo, Brazil
Karina Bellinghausen Merseguel - Univ Fed Sao Paulo, Escola Paulista Med, Lab Especial Micol, Sao Paulo, Brazil
Aziza Khan - Univ Sydney, Marie Bashir Inst Infect Dis & Bioscur, Ctr Infect Dis & Microbiol,Westmead Hosp, Mol Mycol Res Lab,Sydney Med Sch,Westmead Millenn, Sydney, NSW 2006, Australia
Juliana Alves Parente Rocha - Univ Fed Goias, Inst Ciencias Biol, Lab Biol Mol, Goiania, Go, Brazil
Paula Sampaio - Univ Minho, Sch Sci, Dept Biol, Ctr Mol & Environm Biol CBMA, Braga, Portugal
Marcelo Ribeiro da Silva Briones - Univ Fed Sao Paulo, Escola Paulista Med, Lab Genom & Biocomplexidade Evolut, Sao Paulo, Brazil
Renata Carmona e Ferreira - Univ Fed Sao Paulo, Escola Paulista Med, Lab Genom & Biocomplexidade Evolut, Sao Paulo, Brazil
Mauro de Medeiros Muniz - Fundacao Oswald Cruz Fiocruz, Inst Pesquisa Clin Evandro Chagas IPEC, Rio De Janeiro, Brazil
Laura Rosio Castanon-Olivares - Univ Nacl Autonoma Mexico, Dept Microbiol & Parasitol, Fac Med, Unidad Micol, Ciudad Mexico, Mexico
Daniel Estrada-Barcenas - Univ Nacl Autonoma Mexico, Dept Microbiol & Parasitol, Fac Med, Unidad Micol, Ciudad Mexico, Mexico
Carole Cassagne - CHU Timone Adultes, APHM, Parasitol Mycol, Marseille, France
Charles Mary - CHU Timone Adultes, APHM, Parasitol Mycol, Marseille, France
Shu Yao Duan - Univ Sydney, Marie Bashir Inst Infect Dis & Bioscur, Ctr Infect Dis & Microbiol,Westmead Hosp, Mol Mycol Res Lab,Sydney Med Sch,Westmead Millenn, Sydney, NSW 2006, Australia
Fanrong Kong - Westmead Hosp, Ctr Infect Dis & Microbiol, Westmead, NSW 2145, Australia
Annie Ying Sun - Univ Adelaide, Sch Paediat & Reprod Hlth, Adelaide, SA, Australia
Xianyu Zeng - Westmead Hosp, Ctr Infect Dis & Microbiol, Westmead, NSW 2145, Australia
Zuotao Zhao - Westmead Hosp, Ctr Infect Dis & Microbiol, Westmead, NSW 2145, Australia
Nausicaa Gantois - Université de Lille
Francoise Botterel - Centre Hospitalier Universitaire Henri-Mondor
Barbara Robbertse - NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD 20892 USA
Conrad Schoch - NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD 20892 USA
Walter Gams - CBS KNAW, Fungal Biodivers Ctr, Utrecht, Netherlands
David Ellis - Univ Adelaide, SA Pathol, Mycol & Infect Dis, Adelaide, SA, Australia
Catriona Halliday - Westmead Hosp, Ctr Infect Dis & Microbiol, Westmead, NSW 2145, Australia
Sharon Chen - Univ Sydney, Marie Bashir Inst Infect Dis & Bioscur, Ctr Infect Dis & Microbiol,Westmead Hosp, Mol Mycol Res Lab,Sydney Med Sch,Westmead Millenn, Sydney, NSW 2006, Australia
Tania C. Sorrell - Univ Sydney, Marie Bashir Inst Infect Dis & Bioscur, Ctr Infect Dis & Microbiol,Westmead Hosp, Mol Mycol Res Lab,Sydney Med Sch,Westmead Millenn, Sydney, NSW 2006, Australia
Renaud Piarroux - CHU Timone Adultes, APHM, Parasitol Mycol, Marseille, France
Arnaldo L. Colombo - Univ Fed Sao Paulo, Escola Paulista Med, Lab Especial Micol, Sao Paulo, Brazil
Celia Pais - Univ Minho, Sch Sci, Dept Biol, Ctr Mol & Environm Biol CBMA, Braga, Portugal
Sybren de Hoog - CBS KNAW, Fungal Biodivers Ctr, Utrecht, Netherlands
Rosely Maria Zancope-Oliveira - Fundacao Oswald Cruz Fiocruz, Inst Pesquisa Clin Evandro Chagas IPEC, Rio De Janeiro, Brazil
Maria Lucia Taylor - Univ Nacl Autonoma Mexico, Dept Microbiol & Parasitol, Fac Med, Unidad Micol, Ciudad Mexico, Mexico
Conchita Toriello - Univ Nacl Autonoma Mexico, Dept Microbiol & Parasitol, Fac Med, Unidad Micol, Ciudad Mexico, Mexico
Celia Maria de Almeida Soares - Univ Fed Goias, Inst Ciencias Biol, Lab Biol Mol, Goiania, Go, Brazil
Laurence Delhaes - Université de Lille
Dirk Stubbe - Sci Inst Publ Hlth, Biomed Fungi & Yeasts Collect, BCCM IHEM, Brussels, Belgium
Francoise Dromer - CNRS, Inst Pasteur, Natl Reference Ctr Invas Mycoses & Antifungals, Mol Mycol Unit,URA3012, Paris, France
Stephane Ranque - CHU Timone Adultes, APHM, Parasitol Mycol, Marseille, France
Josep Guarro - Univ Rovira & Virgili, IISPV, Fac Med & Ciencies Salut, Unitat Microbiol, E-43201 Reus, Spain
Jose F. Cano-Lira - Univ Rovira & Virgili, IISPV, Fac Med & Ciencies Salut, Unitat Microbiol, E-43201 Reus, Spain
Vincent Robert - CBS KNAW, Fungal Biodivers Ctr, Utrecht, Netherlands
Aristea Velegraki - National and Kapodistrian University of Athens
Wieland Meyer - Univ Sydney, Marie Bashir Inst Infect Dis & Bioscur, Ctr Infect Dis & Microbiol,Westmead Hosp, Mol Mycol Res Lab,Sydney Med Sch,Westmead Millenn, Sydney, NSW 2006, Australia
Détails de publication: Medical mycology (Oxford), Vol.53(4), pp.313-337
Éditeur: Oxford Univ Press
Nombre de pages: 25
Note de subvention: Institut Pasteur and Institut de Veil le Sanitaire APP1031952 / National Health and Medical Research Council of Australia (NHMRC); National Health & Medical Research Council (NHMRC) of Australia NH&MRC of Australia; National Health & Medical Research Council (NHMRC) of Australia E-26/103.157/2011; 2007/08575-1 / FAPERJ; Fundacao Carlos Chagas Filho de Amparo a Pesquisa do Estado do Rio De Janeiro (FAPERJ) Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq); Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPQ) NIH, National Library of Medicine; United States Department of Health & Human Services; National Institutes of Health (NIH) - USA; NIH National Library of Medicine (NLM) Belgian Science Policy Office (Belspo); Belgian Federal Science Policy Office 07/08575-1 / Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESP) 1228961; 122481 / MEXBOL program of CONACyT-Mexico Fundacao de Amparo a Pesquisa do Estado de Goias (FAPEG); Fundacao de Amparo a Pesquisa do Estado do Goias (FAPEG)
Identifiants: 99158966809311
Unité académique: Maladies Infectieuses et Vecteurs : Ecologie, Génétique, Evolution et Contrôle - MIVEGEC
Langue: English
Type de ressource: Journal article