Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

John L Bowman; Takayuki Kohchi; Katsuyuki T Yamato; Jerry Jenkins; Shengqiang Shu; Kimitsune Ishizaki; Shohei Yamaoka; Ryuichi Nishihama; Yasukazu Nakamura; Frédéric Berger; Shiori Sugamata Aki; Felix Althoff; Takashi Araki; Mario Arteaga-Vazquez; Sureshkumar Balasubrmanian; Kerrie Barry; Diane Bauer; Christian Boehm; Liam Briginshaw; Juan Caballero-Perez; Bruno Catarino; Feng Chen; Shota Chiyoda; Mansi Chovatia; Kevin Davies; Mihails Delmans; Taku Demura; Tom Dierschke; Liam Dolan; Ana Dorantes-Acosta; D. Magnus Eklund; Stevie Florent; Eduardo Flores-Sandoval; Asao Fujiyama; Hideya Fukuzawa; Bence Galik; Daniel Grimanelli; Jane Grimwood; Ueli Grossniklaus; Takahiro Hamada; Jim Haseloff; Alexander Hetherington; Asuka Higo; Yuki Hirakawa; Hope Hundley; Yoko Ikeda; Keisuke Inoue; Shin-Ichiro Inoue; Sakiko Ishida; Qidong Jia; Mitsuru Kakita; Takehiko Kanazawa; Yosuke Kawai; Tomokazu Kawashima; Megan Kennedy; Keita Kinose; Toshinori Kinoshita; Yuji Kohara; Eri Koide; Kenji Komatsu; Sarah Kopischke; Minoru Kubo; Junko Kyozuka; Ulf Lagercrantz; Shih-Shun Lin; Erika Lindquist; Anna Lipzen; Chia-Wei Lu; Efraín de Luna; Robert Martienssen; Naoki Minamino; Masaharu Mizutani; Miya Mizutani; Nobuyoshi Mochizuki; Isabel Monte; Rebecca Mosher; Hideki Nagasaki; Hirofumi Nakagami; Satoshi Naramoto; Kazuhiko Nishitani; Misato Ohtani; Takashi Okamoto; Masaki Okumura; Jeremy Phillips; Bernardo Pollak; Anke Reinders; Moritz Rövekamp; Ryosuke Sano; Shinichiro Sawa; Marc Schmid; Makoto Shirakawa; Roberto Solano; Alexander Spunde; Noriyuki Suetsugu; Sumio Sugano; Akifumi Sugiyama; Rui Sun; Yutaka Suzuki; Mizuki Takenaka; Daisuke Takezawa; Hirokazu Tomogane; Masayuki Tsuzuki; Takashi Ueda; Masaaki Umeda; John Ward; Yuichiro Watanabe; Kazufumi Yazaki; Ryusuke Yokoyama; Yoshihiro Yoshitake; Izumi Yotsui; Sabine Zachgo; Jeremy Schmutz; Catherine Adam

doi:10.1016/j.cell.2017.09.030

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Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

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Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

John L Bowman, Takayuki Kohchi, Katsuyuki T Yamato, Jerry Jenkins, Shengqiang Shu, Kimitsune Ishizaki, Shohei Yamaoka, Ryuichi Nishihama, Yasukazu Nakamura, Frédéric Berger, …

Cell, Vol.171(2), pp.287-304.e15

05/10/2017

DOI: https://doi.org/10.1016/j.cell.2017.09.030

Abstract

Marchantia polymorpha

land plant evolution

auxin

sex chromosome

charophycean algae

The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant.

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Title: Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome
Creators - without role: John L Bowman - Monash University
Takayuki Kohchi - Kyoto University
Katsuyuki T Yamato - Kindai University
Jerry Jenkins - HudsonAlpha Institute for Biotechnology
Shengqiang Shu - Joint Genome Institute
Kimitsune Ishizaki - Kobe University
Shohei Yamaoka - Kyoto University
Ryuichi Nishihama - Kyoto University
Yasukazu Nakamura - Research Organization of Information and Systems
Frédéric Berger - Gregor Mendel Institute of Molecular Plant Biology
Shiori Sugamata Aki - Nara Institute of Science and Technology
Felix Althoff - Osnabrück University
Takashi Araki - Kyoto University
Mario Arteaga-Vazquez - Universidad Veracruzana
Sureshkumar Balasubrmanian - Monash University
Kerrie Barry - Joint Genome Institute
Diane Bauer - Joint Genome Institute
Christian Boehm - University of Cambridge
Liam Briginshaw - Monash University
Juan Caballero-Perez - Center for Research and Advanced Studies of the National Polytechnic Institute
Bruno Catarino - University of Oxford
Feng Chen - University of Tennessee at Knoxville
Shota Chiyoda - Kyoto University
Mansi Chovatia - Joint Genome Institute
Kevin Davies - Plant & Food Research
Mihails Delmans - University of Cambridge
Taku Demura - Nara Institute of Science and Technology
Tom Dierschke - Osnabrück University
Liam Dolan - University of Oxford
Ana Dorantes-Acosta - Universidad Veracruzana
D. Magnus Eklund - Uppsala University
Stevie Florent - Monash University
Eduardo Flores-Sandoval - Monash University
Asao Fujiyama - National Institute of Genetics
Hideya Fukuzawa - Kyoto University
Bence Galik - Vienna Biocenter
Daniel Grimanelli - Université de Montpellier, Diversité, Adaptation et Développement des plantes - DIADE
Jane Grimwood
Ueli Grossniklaus - University of Zurich
Takahiro Hamada - Tokyo University of the Arts
Jim Haseloff - University of Cambridge
Alexander Hetherington - University of Oxford
Asuka Higo - Kyoto University
Yuki Hirakawa - Nagoya University
Hope Hundley - Joint Genome Institute
Yoko Ikeda - Okayama University
Keisuke Inoue - Kyoto University
Shin-Ichiro Inoue
Sakiko Ishida - Kyoto University
Qidong Jia - University of Tennessee at Knoxville
Mitsuru Kakita - Nagoya University
Takehiko Kanazawa - The University of Tokyo
Yosuke Kawai - Tohoku Medical Megabank Organization
Tomokazu Kawashima - University of Kentucky
Megan Kennedy - Joint Genome Institute
Keita Kinose - Kyoto University
Toshinori Kinoshita - Nagoya University
Yuji Kohara - National Institute of Genetics
Eri Koide - Kyoto University
Kenji Komatsu - Tokyo University of Agriculture
Sarah Kopischke - Osnabrück University
Minoru Kubo - Nara Institute of Science and Technology
Junko Kyozuka - Tohoku University
Ulf Lagercrantz - Uppsala University
Shih-Shun Lin
Erika Lindquist - Joint Genome Institute
Anna Lipzen - Joint Genome Institute
Chia-Wei Lu - National Taiwan University
Efraín de Luna - Instituto de Ecología
Robert Martienssen - Cold Spring Harbor Laboratory
Naoki Minamino - The University of Tokyo
Masaharu Mizutani - Kobe University
Miya Mizutani - Kyoto University
Nobuyoshi Mochizuki - Kyoto University
Isabel Monte - Centro Nacional de Biotecnología
Rebecca Mosher - University of Arizona
Hideki Nagasaki - Research Organization of Information and Systems
Hirofumi Nakagami - Max Planck Institute for Plant Breeding Research
Satoshi Naramoto - Tohoku University
Kazuhiko Nishitani - Tohoku University
Misato Ohtani - Nara Institute of Science and Technology
Takashi Okamoto - Tokyo Metropolitan University
Masaki Okumura - Nagoya University
Jeremy Phillips - Joint Genome Institute
Bernardo Pollak - University of Cambridge
Anke Reinders - University of Minnesota
Moritz Rövekamp - University of Zurich
Ryosuke Sano - Nara Institute of Science and Technology
Shinichiro Sawa - Kumamoto University
Marc Schmid - University of Zurich
Makoto Shirakawa - Kyoto University
Roberto Solano - Centro Nacional de Biotecnología
Alexander Spunde
Noriyuki Suetsugu - Kyoto University
Sumio Sugano - The University of Tokyo
Akifumi Sugiyama - Kyoto University
Rui Sun - Kyoto University
Yutaka Suzuki - The University of Tokyo
Mizuki Takenaka - Universität Ulm
Daisuke Takezawa - Saitama University
Hirokazu Tomogane
Masayuki Tsuzuki - The University of Tokyo
Takashi Ueda - National Institute for Basic Biology
Masaaki Umeda - Nara Institute of Science and Technology
John Ward - University of Minnesota
Yuichiro Watanabe - Tokyo University of the Arts
Kazufumi Yazaki - Kyoto University
Ryusuke Yokoyama - Tohoku University
Yoshihiro Yoshitake - Kyoto University
Izumi Yotsui - RIKEN Center for Sustainable Resource Science
Sabine Zachgo - Osnabrück University
Jeremy Schmutz - HudsonAlpha Institute for Biotechnology
Catherine Adam - Joint Genome Institute
Publication Details: Cell, Vol.171(2), pp.287-304.e15
Identifiers: 9934298009311
Academic Unit: Diversité, Adaptation et Développement des plantes - DIADE
Language: English
Resource Type: Journal article
Local Fields: hal-03157918