Geography and ecology shape the phylogenetic composition of Amazonian tree communities

Bruno Garcia Luize; David Bauman; Hans ter Steege; Clarisse Palma‐silva; Iêda Leão Do Amaral; Luiz de Souza Coelho; Francisca Dionízia de Almeida Matos; Diógenes de Andrade Lima Filho; Rafael P Salomão; Florian Wittmann; Carolina V Castilho; Marcelo de Jesus Veiga Carim; Juan Ernesto Guevara; Oliver L Phillips; William E Magnusson; Daniel Sabatier; Juan David Cardenas Revilla; Jean-François Molino; Mariana Victória Irume; Maria Pires Martins; José Renan da Silva Guimarães; José Ferreira Ramos; Olaf S Bánki; Maria Teresa Fernandez Piedade; Dairon Cárdenas López; Nigel C A Pitman; Layon O Demarchi; Jochen Schöngart; Evlyn Márcia Moraes de Leão Novo; Percy Núñez Vargas; Thiago Sanna Freire Silva; Eduardo Martins Venticinque; Angelo Gilberto Manzatto; Neidiane Farias Costa Reis; John Terborgh; Katia Regina Casula; Euridice N Honorio Coronado; Abel Monteagudo Mendoza; Juan Carlos Montero; Flávia R C Costa; Ted R Feldpausch; Adriano Costa Quaresma; Nicolás Castaño Arboleda; Charles Eugene Zartman; Timothy J Killeen; Beatriz S Marimon; Ben Hur Marimon‐junior; Rodolfo Vasquez; Bonifacio Mostacedo; Rafael L Assis; Chris Baraloto; Dário Dantas Do Amaral; Julien Engel; Pascal Petronelli; Hernán Castellanos; Marcelo Brilhante de Medeiros; Marcelo Fragomeni Simon; Ana Andrade; José Luís Camargo; William F Laurance; Susan G W Laurance; Lorena Maniguaje Rincón; Juliana Schietti; Thaiane R Sousa; Emanuelle de Sousa Farias; Maria Aparecida Lopes; José Leonardo Lima Magalhães; Henrique Eduardo Mendonça Nascimento; Helder Lima de Queiroz; Gerardo A Aymard C; Roel Brienen; Pablo R Stevenson; Alejandro Araujo‐murakami; Bruno Barçante Ladvocat Cintra; Tim R Baker; Yuri Oliveira Feitosa; Hugo F Mogollón; Joost F Duivenvoorden; Carlos A Peres; Miles R Silman; Leandro Valle Ferreira; José Rafael Lozada; James A Comiskey; José Julio de Toledo; Gabriel Damasco; Nállarett Dávila; Freddie C Draper; Roosevelt García‐villacorta; Aline Lopes; Alberto Vicentini; Fernando Cornejo Valverd; Alfonso Alonso; Luzmila Arroyo; Francisco Dallmeier; Vitor H F Gomes; Eliana M Jimenez; David Neill; Maria Cristina Peñuela Mora; Janaína Costa Noronha; Daniel P P de Aguiar; Flávia Rodrigues Barbosa; Yennie K Bredin; Rainiellen de Sá Carpanedo; Fernanda Antunes Carvalho; Fernanda Coelho de Souza; Kenneth J Feeley; Rogerio Gribel; Torbjørn Haugaasen; Joseph E Hawes; Marcelo Petratti Pansonato; Marcos Ríos Paredes; Domingos de Jesus Rodrigues; Jos Barlow; Erika Berenguer; Izaias Brasil da Silva; Maria Julia Ferreira; Joice Ferreira; Paul V A Fine; Marcelino Carneiro Guedes; Carolina Levis; Juan Carlos Licona; Boris Eduardo Villa Zegarra; Vincent Antoine Vos; Carlos Cerón; Flávia Machado Durgante; Émile Fonty; Terry W Henkel; John Ethan Householder; Isau Huamantupa‐chuquimaco; Marcos Silveira; Juliana Stropp; Raquel Thomas; Doug Daly; William Millike; Guido Pardo Molina; Toby Pennington; Ima Célia Guimarães Vieira; Bianca Weiss Albuquerque; Wegliane Campelo; Alfredo Fuentes; Bente Klitgaard; José Luis Marcelo Pena; J Sebastián Tello; Corine Vriesendorp; Jerome Chave; Anthony Di Fiore; Renato Richard Hilário; Luciana de Oliveira Pereira; Juan Fernando Phillips; Gonzalo Rivas‐torres; Tinde R van Andel; Patricio von Hildebrand; William Balee; Edelcilio Marques Barbosa; Luiz Carlos de Matos Bonates; Hilda Paulette Dávila Doza; Ricardo Zárate Gómez; Therany Gonzales; George Pepe Gallardo Gonzales; Bruce Hoffman; André Braga Junqueira; Yadvinder Malhi; Ires Paula de Andrade Miranda; Linder Felipe Mozombite Pinto; Adriana Prieto; Agustín Rudas; Ademir R Ruschel; Natalino Silva; César I A Vela; Stanford Zent; Egleé L Zent; Angela Cano; Yrma Andreina Carrero Márquez; Diego F Correa; Janaina Barbosa Pedrosa Costa; Bernardo Monteiro Flores; David Galbraith; Milena Holmgren; Michelle Kalamandeen; Guilherme Lobo; Luis Torres Montenegro; Marcelo Trindade Nascimento; Alexandre A Oliveira; Maihyra Marina Pombo; Hirma Ramirez‐angulo; Maira Rocha; Veridiana Vizoni Scudeller; Maria Natalia Umaña; Geertje van der Heijden; Emilio Vilanova Torre; Manuel Augusto Ahuite Reategui; Cláudia Baider; Henrik Balslev; Sasha Cárdenas; Luisa Fernanda Casas; William Farfan‐rios; Cid Ferreira; Reynaldo Linares‐palomino; Casimiro Mendoza; Italo Mesones; Germaine Alexander Parada; Armando Torres‐lezama; Ligia Estela Urrego Giraldo; Daniel Villarroel; Roderick Zagt; Miguel N Alexiades; Edmar Almeida de Oliveira; Karina Garcia‐cabrera; Lionel Hernandez; Walter Palacios Cuenca; Susamar Pansini; Daniela Pauletto; Freddy Ramirez Arevalo; Adeilza Felipe Sampaio; Elvis H Valderrama Sandoval; Luis Valenzuela Gamarra; Kyle G Dexter

doi:10.1111/jbi.14816

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Geography and ecology shape the phylogenetic composition of Amazonian tree communities

Journal article

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Geography and ecology shape the phylogenetic composition of Amazonian tree communities

Bruno Garcia Luize, David Bauman, Hans ter Steege, Clarisse Palma‐silva, Iêda Leão Do Amaral, Luiz de Souza Coelho, Francisca Dionízia de Almeida Matos, Diógenes de Andrade Lima Filho, Rafael P Salomão, Florian Wittmann, …

Journal of Biogeography, Vol.51(7), pp.1163-1184

17/02/2024

DOI: https://doi.org/10.1111/jbi.14816

Abstract

Community assembly

Dispersal limitation

Environmental selection

Evolutionary principal component analysis

Indicator lineage analysis

Moran's eigenvector maps

Neotropics

Niche conservatism

Tropical rain forests

Amazonia

Aim: Amazonia hosts more tree species from numerous evolutionary lineages, both young and ancient, than any other biogeographic region. Previous studies have shown that tree lineages colonized multiple edaphic environments and dispersed widely across Amazonia, leading to a hypothesis, which we test, that lineages should not be strongly associated with either geographic regions or edaphic forest types. Location Amazonia. Taxon Angiosperms (Magnoliids; Monocots; Eudicots). Methods: Data for the abundance of 5082 tree species in 1989 plots were combined with a mega-phylogeny. We applied evolutionary ordination to assess how phylogenetic composition varies across Amazonia. We used variation partitioning and Moran's eigenvector maps (MEM) to test and quantify the separate and joint contributions of spatial and environmental variables to explain the phylogenetic composition of plots. We tested the indicator value of lineages for geographic regions and edaphic forest types and mapped associations onto the phylogeny. Results: In the terra firme and várzea forest types, the phylogenetic composition varies by geographic region, but the igapó and white-sand forest types retain a unique evolutionary signature regardless of region. Overall, we find that soil chemistry, climate and topography explain 24% of the variation in phylogenetic composition, with 79% of that variation being spatially structured (R2 = 19% overall for combined spatial/environmental effects). The phylogenetic composition also shows substantial spatial patterns not related to the environmental variables we quantified (R2 = 28%). A greater number of lineages were significant indicators of geographic regions than forest types. Main Conclusion: Numerous tree lineages, including some ancient ones (>66 Ma), show strong associations with geographic regions and edaphic forest types of Amazonia. This shows that specialization in specific edaphic environments has played a long-standing role in the evolutionary assembly of Amazonian forests. Furthermore, many lineages, even those that have dispersed across Amazonia, dominate within a specific region, likely because of phylogenetically conserved niches for environmental conditions that are prevalent within regions.

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Title: Geography and ecology shape the phylogenetic composition of Amazonian tree communities
Creators - without role: Bruno Garcia Luize - Universidade Estadual de Campinas (UNICAMP)
David Bauman - Université de Montpellier, BotAnique et Modélisation de l'Architecture des Plantes et des végétations - AMAP
Hans ter Steege - Naturalis Biodiversity Center
Clarisse Palma‐silva - Universidade Estadual de Campinas (UNICAMP)
Iêda Leão Do Amaral - National Institute of Amazonian Research
Luiz de Souza Coelho - National Institute of Amazonian Research
Francisca Dionízia de Almeida Matos - National Institute of Amazonian Research
Diógenes de Andrade Lima Filho - National Institute of Amazonian Research
Rafael P Salomão - Museu Paraense Emílio Goeldi
Florian Wittmann - Karlsruhe Institute of Technology
Carolina V Castilho - Universidade Federal de Roraima
Marcelo de Jesus Veiga Carim - Instituto de Pesquisas Tecnológicas
Juan Ernesto Guevara - Universidad de Las Américas
Oliver L Phillips - University of Leeds
William E Magnusson - National Institute of Amazonian Research
Daniel Sabatier - Université de Montpellier, BotAnique et Modélisation de l'Architecture des Plantes et des végétations - AMAP
Juan David Cardenas Revilla - National Institute of Amazonian Research
Jean-François Molino - Université de Montpellier, BotAnique et Modélisation de l'Architecture des Plantes et des végétations - AMAP
Mariana Victória Irume - National Institute of Amazonian Research
Maria Pires Martins - National Institute of Amazonian Research
José Renan da Silva Guimarães
José Ferreira Ramos - National Institute of Amazonian Research
Olaf S Bánki - Naturalis Biodiversity Center
Maria Teresa Fernandez Piedade - National Institute of Amazonian Research
Dairon Cárdenas López - Instituto Sinchi
Nigel C A Pitman - Chicago Board of Education
Layon O Demarchi - National Institute of Amazonian Research
Jochen Schöngart - National Institute of Amazonian Research
Evlyn Márcia Moraes de Leão Novo - National Institute for Space Research
Percy Núñez Vargas - National University of Saint Anthony the Abbot in Cuzco
Thiago Sanna Freire Silva - University of Stirling
Eduardo Martins Venticinque - Universidade Federal do Rio Grande do Norte
Angelo Gilberto Manzatto - Universidade Federal de Rondônia
Neidiane Farias Costa Reis - Universidade Federal de Rondônia
John Terborgh - Florida Museum of Natural History
Katia Regina Casula - Universidade Federal de Rondônia
Euridice N Honorio Coronado
Abel Monteagudo Mendoza - National University of Saint Anthony the Abbot in Cuzco
Juan Carlos Montero - National Institute of Amazonian Research
Flávia R C Costa - National Institute of Amazonian Research
Ted R Feldpausch - University of Exeter
Adriano Costa Quaresma - National Institute of Amazonian Research
Nicolás Castaño Arboleda - Instituto Sinchi
Charles Eugene Zartman - National Institute of Amazonian Research
Timothy J Killeen - Universidad Nacional del Oriente
Beatriz S Marimon - Universidade do Estado de Mato Grosso
Ben Hur Marimon‐junior
Rodolfo Vasquez
Bonifacio Mostacedo - Gabriel René Moreno Autonomous University
Rafael L Assis - University of Oslo
Chris Baraloto
Dário Dantas Do Amaral
Julien Engel - Université de Montpellier, BotAnique et Modélisation de l'Architecture des Plantes et des végétations - AMAP
Pascal Petronelli - Centre de Coopération Internationale en Recherche Agronomique pour le Développement
Hernán Castellanos - Universidad Nacional Experimental de Guayana
Marcelo Brilhante de Medeiros - Brazilian Agricultural Research Corporation
Marcelo Fragomeni Simon - Brazilian Agricultural Research Corporation
Ana Andrade - National Institute of Amazonian Research
José Luís Camargo - National Institute of Amazonian Research
William F Laurance - James Cook University
Susan G W Laurance - James Cook University
Lorena Maniguaje Rincón - National Institute of Amazonian Research
Juliana Schietti - National Institute of Amazonian Research
Thaiane R Sousa - National Institute of Amazonian Research
Emanuelle de Sousa Farias - Fundação Oswaldo Cruz
Maria Aparecida Lopes - Universidade Federal do Pará
José Leonardo Lima Magalhães - Universidade Federal do Pará
Henrique Eduardo Mendonça Nascimento - National Institute of Amazonian Research
Helder Lima de Queiroz - Instituto de Desenvolvimento Sustentável Mamirauá
Gerardo A Aymard C
Roel Brienen - University of Leeds
Pablo R Stevenson - Universidad de Los Andes
Alejandro Araujo‐murakami - Gabriel René Moreno Autonomous University
Bruno Barçante Ladvocat Cintra - Instituto de Botânica
Tim R Baker
Yuri Oliveira Feitosa - National Institute of Amazonian Research
Hugo F Mogollón
Joost F Duivenvoorden - University of Amsterdam
Carlos A Peres - University of East Anglia
Miles R Silman - Wake Forest University
Leandro Valle Ferreira - Museu Paraense Emílio Goeldi
José Rafael Lozada - University of the Andes
James A Comiskey - National Park Service
José Julio de Toledo - Universidade Federal do Amapá
Gabriel Damasco - University of Gothenburg
Nállarett Dávila - Universidade Estadual de Campinas (UNICAMP)
Freddie C Draper - University of Liverpool
Roosevelt García‐villacorta
Aline Lopes - Universidade de Brasília
Alberto Vicentini - National Institute of Amazonian Research
Fernando Cornejo Valverd - Amazon National University of Madre de Dios
Alfonso Alonso - Smithsonian Conservation Biology Institute
Luzmila Arroyo - Museo de Historia Natural Noel Kempff Mercado
Francisco Dallmeier - Smithsonian Conservation Biology Institute
Vitor H F Gomes - Centro Universitário do Pará
Eliana M Jimenez - Universidad Nacional de Colombia
David Neill - Universidad Estatal Amazónica
Maria Cristina Peñuela Mora - Universidad Regional Amazónica IKIAM
Janaína Costa Noronha - Universidade Federal de Mato Grosso
Daniel P P de Aguiar - Fundação de Amparo à Pesquisa do Estado do Amazonas
Flávia Rodrigues Barbosa - National Institute of Amazonian Research
Yennie K Bredin - Norwegian University of Life Sciences
Rainiellen de Sá Carpanedo - Universidade Federal de Mato Grosso
Fernanda Antunes Carvalho - National Institute of Amazonian Research
Fernanda Coelho de Souza - University of Leeds
Kenneth J Feeley - University of Miami
Rogerio Gribel - National Institute of Amazonian Research
Torbjørn Haugaasen - Norwegian University of Life Sciences
Joseph E Hawes - Norwegian University of Life Sciences
Marcelo Petratti Pansonato - National Institute of Amazonian Research
Marcos Ríos Paredes
Domingos de Jesus Rodrigues - Universidade Federal de Mato Grosso
Jos Barlow - Lancaster University
Erika Berenguer - University of Oxford
Izaias Brasil da Silva - Universidade Federal do Acre
Maria Julia Ferreira - Universidade Federal Rural de Pernambuco
Joice Ferreira - Brazilian Agricultural Research Corporation
Paul V A Fine - University of California, Berkeley
Marcelino Carneiro Guedes - Brazilian Agricultural Research Corporation
Carolina Levis - Brazilian Agricultural Research Corporation
Juan Carlos Licona - Bolivian Forest Research Institute
Boris Eduardo Villa Zegarra - Instituto del Mar del Peru
Vincent Antoine Vos - Universidad Autónoma del Beni
Carlos Cerón - Central University of Ecuador
Flávia Machado Durgante - Karlsruhe Institute of Technology
Émile Fonty - Université de Montpellier
Terry W Henkel - Humboldt State University
John Ethan Householder - Karlsruhe Institute of Technology
Isau Huamantupa‐chuquimaco - Amazon National University of Madre de Dios
Marcos Silveira - Universidade Federal do Acre
Juliana Stropp - Museo Nacional de Ciencias Naturales
Raquel Thomas - Iwokrama International Centre for Rainforest Conservation and Development
Doug Daly - New York Botanical Garden
William Millike - Royal Botanic Gardens, Kew
Guido Pardo Molina - Universidad Autónoma del Beni
Toby Pennington
Ima Célia Guimarães Vieira - Museu Paraense Emílio Goeldi
Bianca Weiss Albuquerque - National Institute of Amazonian Research
Wegliane Campelo - Universidade Federal do Amapá
Alfredo Fuentes - Missouri Botanical Garden
Bente Klitgaard - Royal Botanic Gardens, Kew
José Luis Marcelo Pena - Universidad Nacional de Jaén
J Sebastián Tello - Missouri Botanical Garden
Corine Vriesendorp - Chicago Board of Education
Jerome Chave - Centre National de la Recherche Scientifique
Anthony Di Fiore - The University of Texas at Austin
Renato Richard Hilário - Universidade Federal do Amapá
Luciana de Oliveira Pereira - University of Exeter
Juan Fernando Phillips - Fundación para la Educación y el Desarrollo Social
Gonzalo Rivas‐torres - Universidad San Francisco de Quito
Tinde R van Andel - University of Oxford
Patricio von Hildebrand
William Balee - Tulane University
Edelcilio Marques Barbosa - National Institute of Amazonian Research
Luiz Carlos de Matos Bonates - National Institute of Amazonian Research
Hilda Paulette Dávila Doza
Ricardo Zárate Gómez - Instituto de Investigaciones de la Amazonía Peruana
Therany Gonzales
George Pepe Gallardo Gonzales
Bruce Hoffman - Amazon
André Braga Junqueira - Universitat Autònoma de Barcelona
Yadvinder Malhi - University of Oxford
Ires Paula de Andrade Miranda - National Institute of Amazonian Research
Linder Felipe Mozombite Pinto
Adriana Prieto - Universidad Nacional de Colombia
Agustín Rudas - Universidad Nacional de Colombia
Ademir R Ruschel - Brazilian Agricultural Research Corporation
Natalino Silva - Universidade Federal Rural da Amazônia
César I A Vela - National University of Saint Anthony the Abbot in Cuzco
Stanford Zent - Instituto Venezolano de Investigaciones Científicas
Egleé L Zent - Instituto Venezolano de Investigaciones Científicas
Angela Cano - Universidad de Los Andes
Yrma Andreina Carrero Márquez - University of the Andes
Diego F Correa - Universidad de Los Andes
Janaina Barbosa Pedrosa Costa - Brazilian Agricultural Research Corporation
Bernardo Monteiro Flores - Universidade Federal de Santa Catarina
David Galbraith - University of Leeds
Milena Holmgren - Wageningen University & Research
Michelle Kalamandeen - McMaster University
Guilherme Lobo - Universidade Estadual de Campinas (UNICAMP)
Luis Torres Montenegro - Universidad Nacional de la Amazonía Peruana
Marcelo Trindade Nascimento - State University of Norte Fluminense
Alexandre A Oliveira - Universidade de São Paulo
Maihyra Marina Pombo - National Institute of Amazonian Research
Hirma Ramirez‐angulo - University of the Andes
Maira Rocha - National Institute of Amazonian Research
Veridiana Vizoni Scudeller - Universidade Federal do Amazonas
Maria Natalia Umaña - University of Michigan–Ann Arbor
Geertje van der Heijden - University of Nottingham
Emilio Vilanova Torre
Manuel Augusto Ahuite Reategui
Cláudia Baider - Mauritius Sugarcane Industry Research Institute
Henrik Balslev - Aarhus University
Sasha Cárdenas - Universidad de Los Andes
Luisa Fernanda Casas - Universidad de Los Andes
William Farfan‐rios - National University of Saint Anthony the Abbot in Cuzco
Cid Ferreira - National Institute of Amazonian Research
Reynaldo Linares‐palomino - Smithsonian Conservation Biology Institute
Casimiro Mendoza - Tierra
Italo Mesones - University of California, Berkeley
Germaine Alexander Parada - Gabriel René Moreno Autonomous University
Armando Torres‐lezama - University of the Andes
Ligia Estela Urrego Giraldo - Universidad Nacional de Colombia
Daniel Villarroel - Gabriel René Moreno Autonomous University
Roderick Zagt
Miguel N Alexiades - University of Kent
Edmar Almeida de Oliveira - Universidade do Estado de Mato Grosso
Karina Garcia‐cabrera - Wake Forest University
Lionel Hernandez - Universidad Nacional Experimental de Guayana
Walter Palacios Cuenca - Universidad Técnica del Norte
Susamar Pansini - Universidade Federal de Rondônia
Daniela Pauletto - Universidade Federal do Oeste do Pará
Freddy Ramirez Arevalo - Universidad Nacional de la Amazonía Peruana
Adeilza Felipe Sampaio - Universidade Federal de Rondônia
Elvis H Valderrama Sandoval
Luis Valenzuela Gamarra
Kyle G Dexter - Missouri Botanical Garden
Publication Details: Journal of Biogeography, Vol.51(7), pp.1163-1184
Identifiers: 9936509209311
Academic Unit: BotAnique et Modélisation de l'Architecture des Plantes et des végétations - AMAP
Language: English
Resource Type: Journal article
Local Fields: hal-04477184