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Evolution of crop phenotypic spaces through domestication
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Evolution of crop phenotypic spaces through domestication

Arthur Wojcik, Harry Belcram, Agnès Rousselet, Manon Bouët, Marie Brault, Pierre Serin, Augustin Desprez, Renaud Rincent, Andreas Peil, Karine Henry, …
New Phytologist
2026
PMID: 41761403

Résumé

divergent selection life‐history traits near‐infrared spectra phenotypic convergence phenotypic divergence index trait correlations evolution domestication multivariate analysis interspecific comparison phenotypic study phenotypic characterization phenotypic analysis genetic divergence genetic correlation near-infrared spectrometry life history life cycle (biology) biological cycle phenotypic trait
. We used domestication as an in vivo replicated experiment to investigate how divergent selection has shaped the evolution of multivariate phenotypic spaces. . We measured 11-57 qualitative and quantitative traits in 13 species, either unique or shared between species, and established a framework for cross-species comparisons. . Our results revealed significant convergence that translated into a cross-species domestication syndrome. Most species exhibited a reduction of the multivariate phenotypic space during domestication. We brought evidence that Near-Infrared spectra measured on leaves reflect phenotypic evolution unrelated to domestication, enabling its use as a control for sampling effects across species. Building on this, we developed a multivariate phenotypic divergence index (mPDI) to rank species by the extent of phenotypic divergence under domestication. We found a high disjunction of wild and domestic phenotypic spaces in all species. Neither the mPDI nor the relative size of wild vs domestic multivariate phenotypic spaces was influenced by the domestication timing or mating system. Lastly, we observed a progressive decoupling of trait correlations with increasing time since domestication. . In addition to introducing a new index that can be applied for cross-species comparisons, our study uncovers recurring patterns shared among species, pointing to general principles underlying plant domestication.

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