Connecting the data landscape of long‐term ecological studies: the SPI‐Birds data hub

Antica Culina; Frank Adriaensen; Liam Bailey; Malcolm Burgess; Anne Charmantier; Ella Cole; Tapio Eeva; Erik Matthysen; Chloé Nater; Ben Sheldon; Bernt‐erik Sæther; Stefan J.G. Vriend; Zuzana Zajkova; Peter Adamík; Lucy Aplin; Elena Angulo; Alexandr Artemyev; Emilio Barba; Sanja Barišić; Eduardo Belda; C. Can Bilgin; Josefa Bleu; Christiaan Both; Sandra Bouwhuis; Claire Branston; Juli Broggi; Terry Burke; Andrey Bushuev; Carlos Camacho; Daniela Campobello; David Canal; Alejandro Cantarero; Samuel Caro; Maxime Cauchoix; Alexis Chaine; Mariusz Cichoń; Davor Ćiković; Camillo Cusimano; Caroline Deimel; André Dhondt; Niels Dingemanse; Blandine Doligez; Davide Dominoni; Claire Doutrelant; Szymon Drobniak; Anna Dubiec; Marcel Eens; Kjell Einar Erikstad; Silvia Espín; Damien Farine; Jordi Figuerola; Pinar Kavak Gülbeyaz; Arnaud Grégoire; Ian Hartley; Michaela Hau; Gergely Hegyi; Sabine Hille; Camilla Hinde; Benedikt Holtmann; Tatyana Ilyina; Caroline Isaksson; Arne Iserbyt; Elena Ivankina; Wojciech Kania; Bart Kempenaers; Anvar Kerimov; Jan Komdeur; Peter Korsten; Miroslav Král; Miloš Krist; Marcel M. Lambrechts; Carlos Lara; Agu Leivits; András Liker; Jaanis Lodjak; Marko Mägi; Mark Mainwaring; Raivo Mänd; Bruno Massa; Sylvie Massemin; Jesús Martínez‐padilla; Tomasz Mazgajski; Adele Mennerat; Juan Moreno; Alexia Mouchet; Shinichi Nakagawa; Jan‐åke Nilsson; Johan Nilsson; Ana Cláudia Norte; Kees Van Oers; Markku Orell; Jaime Potti; John Quinn; Denis Réale; Tone Kristin Reiertsen; Balázs Rosivall; Andrew Russel; Seppo Rytkönen; Pablo Sánchez‐virosta; Eduardo S.A. Santos; Julia Schroeder; Juan Carlos Senar; Gábor Seress; Tore Slagsvold; Marta Szulkin; Céline Teplitsky; Vallo Tilgar; Andrey Tolstoguzov; János Török; Mihai Valcu; Emma Vatka; Simon Verhulst; Marcel Visser; Hannah Watson; Teru Yuta; José Zamora‐marín

doi:10.1111/1365-2656.13388

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Connecting the data landscape of long‐term ecological studies: the SPI‐Birds data hub

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Connecting the data landscape of long‐term ecological studies: the SPI‐Birds data hub

Antica Culina, Frank Adriaensen, Liam Bailey, Malcolm Burgess, Anne Charmantier, Ella Cole, Tapio Eeva, Erik Matthysen, Chloé Nater, Ben Sheldon, …

Journal of Animal Ecology, Vol.90(9), pp.2147-2160

01/09/2021

DOI: https://doi.org/10.1111/1365-2656.13388

PMID: 33205462

Résumé

data standards

database

FAIR data

long-term studies

meta-data standards

research network

birds

animals

databases, factual

metadata

The integration and synthesis of the data in different areas of science is drastically slowed and hindered by a lack of standards and networking programmes. Long-term studies of individually marked animals are not an exception. These studies are especially important as instrumental for understanding evolutionary and ecological processes in the wild. Furthermore, their number and global distribution provides a unique opportunity to assess the generality of patterns and to address broad-scale global issues (e.g. climate change).To solve data integration issues and enable a new scale of ecological and evolutionary research based on long-term studies of birds, we have created the SPI-Birds Network and Database (www.spibirds.org)—a large-scale initiative that connects data from, and researchers working on, studies of wild populations of individually recognizable (usually ringed) birds. Within year and a half since the establishment, SPI-Birds has recruited over 120 members, and currently hosts data on almost 1.5 million individual birds collected in 80 populations over 2,000 cumulative years, and counting.SPI-Birds acts as a data hub and a catalogue of studied populations. It prevents data loss, secures easy data finding, use and integration and thus facilitates collaboration and synthesis. We provide community-derived data and meta-data standards and improve data integrity guided by the principles of Findable, Accessible, Interoperable and Reusable (FAIR), and aligned with the existing metadata languages (e.g. ecological meta-data language).The encouraging community involvement stems from SPI-Bird's decentralized approach: research groups retain full control over data use and their way of data management, while SPI-Birds creates tailored pipelines to convert each unique data format into a standard format. We outline the lessons learned, so that other communities (e.g. those working on other taxa) can adapt our successful model. Creating community-specific hubs (such as ours, COMADRE for animal demography, etc.) will aid much-needed large-scale ecological data integration.

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Titre: Connecting the data landscape of long‐term ecological studies: the SPI‐Birds data hub
Créateurs - sans rôle: Antica Culina - Netherlands Institute of Ecology
Frank Adriaensen - University of Antwerp
Liam Bailey - Leibniz Institute for Zoo and Wildlife Research
Malcolm Burgess - Royal Society for the Protection of Birds
Anne Charmantier - Université de Montpellier, Centre d'Ecologie Fonctionnelle et Evolutive - CEFE
Ella Cole - University of Oxford
Tapio Eeva - University of Turku
Erik Matthysen - University of Antwerp
Chloé Nater - Norwegian University of Science and Technology
Ben Sheldon - University of Oxford
Bernt‐erik Sæther - Norwegian University of Science and Technology
Stefan J.G. Vriend - Norwegian University of Science and Technology
Zuzana Zajkova - Netherlands Institute of Ecology
Peter Adamík - Palacký University Olomouc
Lucy Aplin - Max Planck Institute of Animal Behavior
Elena Angulo - Estación Biológica de Doñana
Alexandr Artemyev - Karelian Research Centre
Emilio Barba - Parc Científic de la Universitat de València
Sanja Barišić - Croatian Academy of Sciences and Arts
Eduardo Belda - Universitat Politècnica de València
C. Can Bilgin
Josefa Bleu - Centre National de la Recherche Scientifique
Christiaan Both - University of Groningen
Sandra Bouwhuis - Institute of Avian Research
Claire Branston - University of Glasgow
Juli Broggi - Estación Biológica de Doñana
Terry Burke - University of Sheffield
Andrey Bushuev - Lomonosov Moscow State University
Carlos Camacho - Lund University
Daniela Campobello - University of Palermo
David Canal - Institute of Ecology and Botany
Alejandro Cantarero - University of Turku
Samuel Caro - Université de Montpellier, Centre d'Ecologie Fonctionnelle et Evolutive - CEFE
Maxime Cauchoix - Station d’Écologie Théorique et Expérimentale
Alexis Chaine - Centre National de la Recherche Scientifique
Mariusz Cichoń - Jagiellonian University
Davor Ćiković - Croatian Academy of Sciences and Arts
Camillo Cusimano
Caroline Deimel - Max Planck Institute for Ornithology
André Dhondt - University of Antwerp
Niels Dingemanse - Ludwig-Maximilians-Universität München
Blandine Doligez - Uppsala University
Davide Dominoni - University of Glasgow
Claire Doutrelant - Université de Montpellier, Centre d'Ecologie Fonctionnelle et Evolutive - CEFE
Szymon Drobniak - Jagiellonian University
Anna Dubiec - Museum and Institute of Zoology
Marcel Eens - University of Antwerp
Kjell Einar Erikstad - Norwegian Institute for Nature Research
Silvia Espín - Universidad de Murcia
Damien Farine - University of Konstanz
Jordi Figuerola - Estación Biológica de Doñana
Pinar Kavak Gülbeyaz
Arnaud Grégoire - Université de Montpellier, Centre d'Ecologie Fonctionnelle et Evolutive - CEFE
Ian Hartley - Lancaster University
Michaela Hau - Max Planck Institute for Ornithology
Gergely Hegyi - Eötvös Loránd University
Sabine Hille - BOKU University
Camilla Hinde - Anglia Ruskin University
Benedikt Holtmann - Ludwig-Maximilians-Universität München
Tatyana Ilyina - Lomonosov Moscow State University
Caroline Isaksson - Lund University
Arne Iserbyt - University of Antwerp
Elena Ivankina
Wojciech Kania - Museum and Institute of Zoology
Bart Kempenaers - Max Planck Institute for Ornithology
Anvar Kerimov
Jan Komdeur - University of Groningen
Peter Korsten - Bielefeld University
Miroslav Král - Palacký University Olomouc
Miloš Krist - Palacký University Olomouc
Marcel M. Lambrechts - Université de Montpellier, Centre d'Ecologie Fonctionnelle et Evolutive - CEFE
Carlos Lara - University of Otago
Agu Leivits
András Liker - University of Pannonia
Jaanis Lodjak - University of Tartu
Marko Mägi - University of Tartu
Mark Mainwaring - University of Montana
Raivo Mänd - University of Tartu
Bruno Massa
Sylvie Massemin - Centre National de la Recherche Scientifique
Jesús Martínez‐padilla - Instituto Pirenaico de Ecología
Tomasz Mazgajski - Museum and Institute of Zoology
Adele Mennerat - University of Bergen
Juan Moreno - Museo Nacional de Ciencias Naturales
Alexia Mouchet - Ludwig-Maximilians-Universität München
Shinichi Nakagawa - UNSW Sydney
Jan‐åke Nilsson - Lund University
Johan Nilsson - Lund University
Ana Cláudia Norte - University of Coimbra
Kees Van Oers
Markku Orell - University of Oulu
Jaime Potti - Estación Biológica de Doñana
John Quinn - University College Cork
Denis Réale - Université du Québec à Montréal
Tone Kristin Reiertsen - Norwegian Institute for Nature Research
Balázs Rosivall - Eötvös Loránd University
Andrew Russel
Seppo Rytkönen - University of Oulu
Pablo Sánchez‐virosta - Universidad de Murcia
Eduardo S.A. Santos - Universidade de São Paulo
Julia Schroeder
Juan Carlos Senar
Gábor Seress
Tore Slagsvold
Marta Szulkin
Céline Teplitsky - Université de Montpellier, Centre d'Ecologie Fonctionnelle et Evolutive - CEFE
Vallo Tilgar
Andrey Tolstoguzov
János Török
Mihai Valcu
Emma Vatka
Simon Verhulst
Marcel Visser
Hannah Watson
Teru Yuta
José Zamora‐marín
Détails de publication: Journal of Animal Ecology, Vol.90(9), pp.2147-2160
Identifiants: 99150998709311
Unité académique: Centre d'Ecologie Fonctionnelle et Evolutive - CEFE
Langue: English
Type de ressource: Journal article
Champs locaux: hal-03035065