Between but Not Within-Species Variation in the Distribution of Fitness Effects

Jennifer James; Chedly Kastally; Katharina B Budde; Santiago C. Gonzalez-Martinez; Pascal Milesi; Tanja Pyhäjärvi; Martin Lascoux; . Gentree Consortium; Paraskevi Alizoti; Ricardo Alía; Olivier Ambrosio; Filippos A Aravanopoulos; Georg von Arx; Audrey Albet; Francisco Auñón; Camilla Avanzi; Evangelia Avramidou; Francesca Bagnoli; Marko Bajc; Eduardo Ballesteros; Evangelos Barbas; José M García del Barrio; Cristina Bastias; Catherine Bastien; Giorgia Beffa; Raquel Benavides; Vanina Benoit; Frédéric Bernier; Henri Bignalet; Guillaume Bodineau; Damien Bouic; Sabine Brodbeck; William Brunetto; Jurata Buchovska; Corinne Buret; Melanie Buy; Ana M Cabanillas-Saldaña; Bárbara Carvalho; Stephen Cavers; Fernando del Caño; Sandra Cervantes; Nicolas Cheval; José M Climent; Marianne Correard; Eva Cremer; Darius Danusevičius; Benjamin Dauphin; Jean-Luc Denou; Bernard Dokhelar; Alexis Ducousso; Bruno Fady; Patricia Faivre-Rampant; Anna-Maria Farsakoglou; Patrick Fonti; Ioannis Ganopoulos; Olivier Gilg; Nicolas de Girardi; René Graf; Alan Gray; Delphine Grivet; Felix Gugerli; Christoph Hartleitner; Katrin Heer; Enja Hollenbach; Agathe Hurel; Bernard Issenhuth; Florence Jean; Véronique Jorge; Arnaud Jouineau; Jan-Philipp Kappner; Robert Kesälahti; Florian Knutzen; Sonja T Kujala; Timo A Kumpula; Katri Kärkkäinen; Mariaceleste Labriola; Celine Lalanne; Johannes Lambertz; Gregoire Le-Provost; Vincent Lejeune; Isabelle Lesur-Kupin; Joseph Levillain; Mirko Liesebach; David López-Quiroga; Ermioni Malliarou; Jérémy Marchon; Nicolas Mariotte; Antonio Mas; Silvia Matesanz; Benjamin Meier; Helge Meischner; Célia Michotey; Sandro Morganti; Tor Myking; Daniel Nievergelt; Anne Eskild Nilsen; Eduardo Notivol; Dario I Ojeda; Sanna Olsson; Lars Opgenoorth; Geir Ostreng; Birte Pakull; Annika Perry; Sara Pinosio; Andrea Piotti; Christophe Plomion; Nicolas Poinot; Mehdi Pringarbe; Luc Puzos; Annie Raffin; José A Ramírez-Valiente; Christian Rellstab; Dourthe Remi; Oliver Reutimann; Sebastian Richter; Juan J Robledo-Arnuncio; Odile Rogier; Elisabet Martínez Sancho; Outi Savolainen; Simone Scalabrin; Volker Schneck; Silvio Schueler; Ivan Scotti; Sergio San Segundo; Vladimir Semerikov; Lenka Slámová; Ilaria Spanu; Jørn Henrik Sønstebø; Jean Thevenet; Mari Mette Tollefsrud; Norbert Turion; Fernando Valladares; Giovanni G Vendramin; Marc Villar; Marjana Westergren; Johan Westin

doi:10.1093/molbev/msad228

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Between but Not Within-Species Variation in the Distribution of Fitness Effects

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Between but Not Within-Species Variation in the Distribution of Fitness Effects

Jennifer James, Chedly Kastally, Katharina B Budde, Santiago C. Gonzalez-Martinez, Pascal Milesi, Tanja Pyhäjärvi, Martin Lascoux, . Gentree Consortium, Paraskevi Alizoti, Ricardo Alía, …

Molecular Biology and Evolution, Vol.40(11)

03/11/2023

DOI: https://doi.org/10.1093/molbev/msad228

Abstract

DFE

Deleterious mutations

Population structure

Forest trees

New mutations provide the raw material for evolution and adaptation. The distribution of fitness effects (DFE) describes the spectrum of effects of new mutations that can occur along a genome, and is, therefore, of vital interest in evolutionary biology. Recent work has uncovered striking similarities in the DFE between closely related species, prompting us to ask whether there is variation in the DFE among populations of the same species, or among species with different degrees of divergence, that is whether there is variation in the DFE at different levels of evolution. Using exome capture data from six tree species sampled across Europe we characterized the DFE for multiple species, and for each species, multiple populations, and investigated the factors potentially influencing the DFE, such as demography, population divergence, and genetic background. We find statistical support for the presence of variation in the DFE at the species level, even among relatively closely related species. However, we find very little difference at the population level, suggesting that differences in the DFE are primarily driven by deep features of species biology, and those evolutionarily recent events, such as demographic changes and local adaptation, have little impact.

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Title: Between but Not Within-Species Variation in the Distribution of Fitness Effects
Creators - without role: Jennifer James - Uppsala University
Chedly Kastally - University of Helsinki
Katharina B Budde - University of Göttingen
Santiago C. Gonzalez-Martinez - Centre d'Études Scientifiques et Techniques d'Aquitaine
Pascal Milesi - Uppsala University
Tanja Pyhäjärvi - University of Helsinki
Martin Lascoux - Uppsala University
. Gentree Consortium
Paraskevi Alizoti - Aristotle University of Thessaloniki
Ricardo Alía - Instituto Nacional de Innovación Agraria
Olivier Ambrosio - Écologie des Forêts Méditerranéennes
Filippos A Aravanopoulos - Aristotle University of Thessaloniki
Georg von Arx - Swiss Federal Institute for Forest, Snow and Landscape Research
Audrey Albet - Unité expérimentale Forêt Pierroton
Francisco Auñón - Universidad Nacional Agraria La Molina
Camilla Avanzi - Consorzio Roma Ricerche
Evangelia Avramidou - Aristotle University of Thessaloniki
Francesca Bagnoli - Universidad Nacional Agraria La Molina
Marko Bajc - Slovenian Forestry Institute
Eduardo Ballesteros - Universidad Nacional Agraria La Molina
Evangelos Barbas - Aristotle University of Thessaloniki
José M García del Barrio - Universidad Nacional Agraria La Molina
Cristina Bastias - Université de Montpellier, Centre d'Ecologie Fonctionnelle et Evolutive - CEFE
Catherine Bastien - Département écologie et biodiversité des milieux forestiers, prairiaux et aquatiques
Giorgia Beffa - Swiss Federal Institute for Forest, Snow and Landscape Research
Raquel Benavides - Museo Nacional de Ciencias Naturales
Vanina Benoit - Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
Frédéric Bernier - Forêt Méditerranéenne
Henri Bignalet - Forêt Méditerranéenne
Guillaume Bodineau - Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
Damien Bouic - Universidad Nacional Agraria La Molina
Sabine Brodbeck - Swiss Federal Institute for Forest, Snow and Landscape Research
William Brunetto - Écologie des Forêts Méditerranéennes
Jurata Buchovska - Vytautas Magnus University
Corinne Buret - Biologie intégrée pour la valorisation de la diversité des arbres et de la forêt
Melanie Buy - Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
Ana M Cabanillas-Saldaña - Secretariat of Agriculture, Livestock, Rural Development, Fisheries and Food
Bárbara Carvalho - Museo Nacional de Ciencias Naturales
Stephen Cavers - UK Centre for Ecology & Hydrology
Fernando del Caño - Universidad Nacional Agraria La Molina
Sandra Cervantes - University of Oulu
Nicolas Cheval - Forêt Méditerranéenne
José M Climent - Instituto Nacional de Innovación Agraria
Marianne Correard - Forêt Méditerranéenne
Eva Cremer - Forest Institute
Darius Danusevičius - Vytautas Magnus University
Benjamin Dauphin - Swiss Federal Institute for Forest, Snow and Landscape Research
Jean-Luc Denou - Forêt Méditerranéenne
Bernard Dokhelar - Forêt Méditerranéenne
Alexis Ducousso - UMR BIOdiversity, GEnes & Communities
Bruno Fady - Écologie des Forêts Méditerranéennes
Patricia Faivre-Rampant - Fondation Jean Dausset-CEPH
Anna-Maria Farsakoglou
Patrick Fonti - University of Helsinki
Ioannis Ganopoulos - National Agricultural Research Foundation
Olivier Gilg - Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
Nicolas de Girardi - Swiss Federal Institute for Forest, Snow and Landscape Research
René Graf - Swiss Federal Institute for Forest, Snow and Landscape Research
Alan Gray - UK Centre for Ecology & Hydrology
Delphine Grivet - Consejo Superior de Investigaciones Científicas
Felix Gugerli - Swiss Federal Institute for Forest, Snow and Landscape Research
Christoph Hartleitner
Katrin Heer - University of Freiburg
Enja Hollenbach - Philipps University of Marburg
Agathe Hurel - UMR BIOdiversity, GEnes & Communities
Bernard Issenhuth - Centre d'Études Scientifiques et Techniques d'Aquitaine
Florence Jean - Écologie des Forêts Méditerranéennes
Véronique Jorge - Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
Arnaud Jouineau - Écologie des Forêts Méditerranéennes
Jan-Philipp Kappner
Robert Kesälahti - University of Oulu
Florian Knutzen
Sonja T Kujala - AgroParisTech
Timo A Kumpula - University of Oulu
Katri Kärkkäinen - AgroParisTech
Mariaceleste Labriola
Celine Lalanne - Université de Bordeaux
Johannes Lambertz - Philipps University of Marburg
Gregoire Le-Provost
Vincent Lejeune - Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
Isabelle Lesur-Kupin
Joseph Levillain
Mirko Liesebach
David López-Quiroga - Consejo Superior de Investigaciones Científicas
Ermioni Malliarou - Uppsala University
Jérémy Marchon - Swiss Federal Institute for Forest, Snow and Landscape Research
Nicolas Mariotte - Écologie des Forêts Méditerranéennes
Antonio Mas - Museo Nacional de Ciencias Naturales
Silvia Matesanz
Benjamin Meier - Swiss Federal Institute for Forest, Snow and Landscape Research
Helge Meischner - Philipps University of Marburg
Célia Michotey - Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
Sandro Morganti - Swiss Federal Institute for Forest, Snow and Landscape Research
Tor Myking
Daniel Nievergelt - Swiss Federal Institute for Forest, Snow and Landscape Research
Anne Eskild Nilsen
Eduardo Notivol
Dario I Ojeda
Sanna Olsson - Consejo Superior de Investigaciones Científicas
Lars Opgenoorth - Swiss Federal Institute for Forest, Snow and Landscape Research
Geir Ostreng
Birte Pakull
Annika Perry - UK Centre for Ecology & Hydrology
Sara Pinosio - Institute of Biosciences and Bioresources
Andrea Piotti - Institute of Biosciences and Bioresources
Christophe Plomion
Nicolas Poinot - Centre d'Études Scientifiques et Techniques d'Aquitaine
Mehdi Pringarbe - Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
Luc Puzos - Centre d'Études Scientifiques et Techniques d'Aquitaine
Annie Raffin - University of Göttingen
José A Ramírez-Valiente - Swedish Collegium for Advanced Study
Christian Rellstab - Swiss Federal Institute for Forest, Snow and Landscape Research
Dourthe Remi - Centre d'Études Scientifiques et Techniques d'Aquitaine
Oliver Reutimann - Swiss Federal Institute for Forest, Snow and Landscape Research
Sebastian Richter - Philipps University of Marburg
Juan J Robledo-Arnuncio - Swedish Collegium for Advanced Study
Odile Rogier - Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
Elisabet Martínez Sancho - Swiss Federal Institute for Forest, Snow and Landscape Research
Outi Savolainen - University of Oulu
Simone Scalabrin
Volker Schneck
Silvio Schueler
Ivan Scotti - Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
Sergio San Segundo
Vladimir Semerikov
Lenka Slámová - University of Helsinki
Ilaria Spanu
Jørn Henrik Sønstebø
Jean Thevenet - Forêt Méditerranéenne
Mari Mette Tollefsrud
Norbert Turion - Forêt Méditerranéenne
Fernando Valladares - Museo Nacional de Ciencias Naturales
Giovanni G Vendramin - Institute of Biosciences and Bioresources
Marc Villar
Marjana Westergren
Johan Westin
Publication Details: Molecular Biology and Evolution, Vol.40(11)
Identifiers: 9937592609311
Academic Unit: Centre d'Ecologie Fonctionnelle et Evolutive - CEFE
Language: English
Resource Type: Journal article
Local Fields: hal-04598142