Genotyping of 4 European sea bass families with the DlabCHIP SNPs genotyping array

Francois Allal; Ronan Griot; Florence Phocas; Sophie Brard-Fudulea; Romain Morvezen; Anastasia Bestin; Pierrick Haffray; Yoannah François; Thierry Morin; Charles Poncet; Alain Vergnet; Sophie Cariou; Joseph Brunier; Jean-Sébastien Bruant; Bruno Peyrou; Pierre-Alexandre Gagnaire; Marc Vandeputte

doi:10.17882/75696

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Genotyping of 4 European sea bass families with the DlabCHIP SNPs genotyping array

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Genotyping of 4 European sea bass families with the DlabCHIP SNPs genotyping array

Francois Allal, Ronan Griot, Florence Phocas, Sophie Brard-Fudulea, Romain Morvezen, Anastasia Bestin, Pierrick Haffray, Yoannah François, Thierry Morin, Charles Poncet, …

SEANOE

2020

DOI: https://doi.org/10.17882/75696

Résumé

Backcross families

DLabCHIP

European sea bass

Genotype

Four experimental backcross full-sib families (378, 454, 291 and 211 individuals) were produced by in vitro fertilization at Ifremer (Palavas-les-Flots, France). All 1334 individuals were genotyped with a ThermoFisher AxiomTM Sea Bass 57k SNP DlabChip at the genotyping platform Gentyane (INRAE, Clermont-Ferrand, France). SNP calling was done using ThermoFisher software AxiomAnalysisSuiteTM. Preliminary quality controls were applied with threshold values of 95% for SNP call rate and 90% for sample call rate.

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Titre: Genotyping of 4 European sea bass families with the DlabCHIP SNPs genotyping array
Créateurs - sans rôle: Francois Allal - MARBEC, Univ. Montpellier, Ifremer, CNRS, IRD, 34250 Palavas-les-Flots, France
Ronan Griot - SYSAAF, Station LPGP/INRAE, Campus de Beaulieu, 35042 Rennes, France
Florence Phocas - Université Paris-Saclay, INRAE, AgroParisTech, GABI, 78350 Jouy-en-Josas, France
Sophie Brard-Fudulea - SYSAAF, UMR BOA, Centre INRA Val de Loire, 37380 Nouzilly, France
Romain Morvezen - SYSAAF, Station LPGP/INRAE, Campus de Beaulieu, 35042 Rennes, France
Anastasia Bestin - Université Rennes 1
Pierrick Haffray - SYSAAF, Station LPGP/INRAE, Campus de Beaulieu, 35042 Rennes, France
Yoannah François - Université Rennes 1
Thierry Morin - ANSES, National Reference Laboratory for Regulated Fish Diseases, Technopôle Brest- Iroise, 29280 Plouzané, France
Charles Poncet - INRAE-UCA, UMR GDEC, Clermont-Ferrand, France
Alain Vergnet - Ifremer
Sophie Cariou - Ferme Marine De Douhet, 17840 La Brée Les Bains, France
Joseph Brunier - Ecloserie Marie de Gravelines-Ichtus, 59273 Gravelines, France
Jean-Sébastien Bruant - Ferme Marine De Douhet, 17840 La Brée Les Bains, France
Bruno Peyrou - Ecloserie Marie de Gravelines-Ichtus, 59273 Gravelines, France
Pierre-Alexandre Gagnaire - ISEM, Université de Montpellier, CNRS-IRD-EPHE-UM, France
Marc Vandeputte - Université Paris-Saclay, INRAE, AgroParisTech, GABI, 78350 Jouy-en-Josas, France
Éditeur: SEANOE
Identifiants: 99146352509311
Unité académique: Institut des Sciences de l'Evolution - Montpellier - ISEM
Langue: English
Type de ressource: Dataset