Data from: Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

France Denoeud; Simon Henriet; Sutada Mungpakdee; Jean-Marc Aury; Corinne Da Silva; Henner Brinkmann; Jana Mikhaleva; Lisbeth C. Olsen; Claire Jubin; Cristian Cañestro; Jean-Marie Bouquet; Gemma Danks; Julie Poulain; Coen Campsteijn; Marcin Adamski; Ismael Cross; Fekadu Yadetie; Matthieu Muffato; Alexandra Louis; Stephen Butcher; Georgia Tsagkogeorga; Anke Konrad; Sarabdeep Singh; Marit F. Jensen; Evelyne Huynh Cong; Helen Eikeseth-Otteraa; Benjamin Noel; Véronique Anthouard; Betina M. Porcel; Rym Kachouri-Lafond; Atsuo Nishino; Matteo Ugolini; Pascal Chourrout; Hiroki Nishida; Rein Aasland; Snehalata Huzurbazar; Eric Westhof; Frédéric Delsuc; Hans Lehrach; Richard Reinhardt; Jean Weissenbach; Scott W. Roy; François Artiguenave; John H. Postlethwait; J. Robert Manak; Eric M. Thompson; Olivier Jaillon; Louis Du Pasquier; Pierre Boudinot; David A. Liberles; Jean-Nicolas Volff; Hervé Philippe; Boris Lenhard; Hugues Roest Crollius; Patrick Wincker; Daniel Chourrout

doi:10.5061/dryad.8338

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Data from: Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

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Data from: Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

France Denoeud, Simon Henriet, Sutada Mungpakdee, Jean-Marc Aury, Corinne Da Silva, Henner Brinkmann, Jana Mikhaleva, Lisbeth C. Olsen, Claire Jubin, Cristian Cañestro, …

Dryad

14/01/2011

DOI: https://doi.org/10.5061/dryad.8338

Résumé

chordates

Complete genome

Introns

mitochondrial genome

mitogenomics

Mixture models

molecular phylogeny

Oikopleura dioica

Tunicata

tunicates

Urochordata

Urochordates

Genomes of animals as different as sponges and humans show conservation of global architecture. Here we show that multiple genomic features including transposon diversity, developmental gene repertoire, physical gene order, and intron-exon organization are shattered in the tunicate Oikopleura, belonging to the sister group of vertebrates and retaining chordate morphology. Ancestral architecture of animal genomes can be deeply modified and may therefore be largely nonadaptive. This rapidly evolving animal lineage thus offers unique perspectives on the level of genome plasticity. It also illuminates issues as fundamental as the mechanisms of intron gain.

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Titre: Data from: Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate
Créateurs - sans rôle: France Denoeud - Genoscope
Simon Henriet - University of Bergen
Sutada Mungpakdee - University of Bergen
Jean-Marc Aury - Genoscope
Corinne Da Silva - Genoscope
Henner Brinkmann - Université de Montréal
Jana Mikhaleva - University of Bergen
Lisbeth C. Olsen
Claire Jubin - Genoscope
Cristian Cañestro - University of Oregon
Jean-Marie Bouquet - University of Bergen
Gemma Danks - University of Bergen
Julie Poulain - Genoscope
Coen Campsteijn - University of Bergen
Marcin Adamski - University of Bergen
Ismael Cross - Universidad de Cádiz
Fekadu Yadetie - University of Bergen
Matthieu Muffato - École Normale Supérieure Paris-Saclay
Alexandra Louis - École Normale Supérieure Paris-Saclay
Stephen Butcher - University of Iowa
Georgia Tsagkogeorga - Université de Montpellier
Anke Konrad - University of Wyoming
Sarabdeep Singh - University of Wyoming
Marit F. Jensen - University of Bergen
Evelyne Huynh Cong - University of Bergen
Helen Eikeseth-Otteraa - University of Bergen
Benjamin Noel - Genoscope
Véronique Anthouard - Genoscope
Betina M. Porcel - Genoscope
Rym Kachouri-Lafond - Institut de Biologie Moléculaire et Cellulaire
Atsuo Nishino - The University of Osaka
Matteo Ugolini - University of Bergen
Pascal Chourrout
Hiroki Nishida - The University of Osaka
Rein Aasland - University of Bergen
Snehalata Huzurbazar - University of Wyoming
Eric Westhof - Institut de Biologie Moléculaire et Cellulaire
Frédéric Delsuc - Université de Montpellier
Hans Lehrach - Max Planck Institute for Molecular Genetics
Richard Reinhardt - Max Planck Institute for Molecular Genetics
Jean Weissenbach - Genoscope
Scott W. Roy - National Center for Biotechnology Information
François Artiguenave - Genoscope
John H. Postlethwait - University of Oregon
J. Robert Manak - University of Iowa
Eric M. Thompson - University of Bergen
Olivier Jaillon - Genoscope
Louis Du Pasquier - University of Basel
Pierre Boudinot - Centre Île-de-France - Jouy-en-Josas - Antony
David A. Liberles - University of Wyoming
Jean-Nicolas Volff - Université Claude Bernard Lyon 1
Hervé Philippe - Université de Montréal
Boris Lenhard - University of Bergen
Hugues Roest Crollius - École Normale Supérieure Paris-Saclay
Patrick Wincker - Genoscope
Daniel Chourrout - Centre Hospitalier d'Albi
Éditeur: Dryad
Identifiants: 99146324009311
Unité académique: Institut des Sciences de l'Evolution - Montpellier - ISEM
Langue: English
Type de ressource: Dataset