Data from: Geography and ecology shape the phylogenetic composition of Amazonian tree communities

Bruno Garcia Luize; Bruno Luize; David Bauman; Hans ter Steege; Clarisse Palma da Silva; Iêda Amaral; Luiz de Souza Coelho; Francisca Dionízia de Almeida Matos; Diógenes de Andrade Lima Filho; Rafael Salomão; Florian Wittmann; Carolina V. Castilho; Marcelo de Jesus Veiga Carim; Juan Guevara; Oliver Phillips; Willian Magnusson; Daniel Sabatier; Juan David Cardenas Revilla; Jean-François Molino; Mariana V. Irume; Maria Pires Martins; José Renan da Silva Guimarães; José Ferreira Ramos; Olaf S. Bánki; Maria Teresa Piedade; Dairon Cárdenas López; Nigel Pitman; Layon O. Demarchi; Jochen Schöngart; Evlyn Márcia Moraes de Leão Novo; Percy Núñez Vargas; Thiago Silva; Eduardo Venticinque; Angelo Gilberto Manzatto; Neidiane Farias Costa Reis; John Terborgh; Katia Regina Casula; Eurídice Honorio Coronado; Abel Monteagudo Mendoza; Juan Carlos Montero; Flávia Costa; Ted Feldpausch; Adriano C. Quaresma; Nicolás Castaño Arboleda; Charles Zartman; Timothy J. Killeen; Beatriz Marimon; Ben Hur Marimon-Junior; Rodolfo Vasquez; Bonifacio Mostacedo; Rafael L. Assis; Christopher Baraloto; Dário Amaral; Julien Engel; Pascal Petronelli; Hernán Castellanos; Marcelo Brilhante de Medeiros; Marcelo Simon; Ana Andrade; José Luís Camargo; William Laurance; Susan Laurance; Lorena Maniguaje Rincón; Juliana Schietti; Thaiane Rodrigues de Sousa; Emanuelle de Sousa Farias; Maria Aparecida Lopes; José Leonardo Magalhães; Henrique Eduardo Mendonça Nascimento; Helder Queiroz; Gerardo A. Aymard C.; Roel Brienen; Pablo Stevenson; Alejandro Araujo-Murakami; Bruno Barçante Ladvocat Cintra; Timothy Baker; Yuri Oliveira Feitosa; Hugo Mogollón; Joost Duivenvoorden; Carlos Peres; Miles Silman; Leandro Ferreira; Jose R. Lozada; Jim Comiskey; José Júlio de Toledo; Gabriel Damasco; Nállarett Dávila; Frederick Draper; Roosevelt García-Villacorta; Aline Lopes; Alberto Vicentini; Fernando Cornejo Valverde; Alfonso Alonso; Luzmila Arroyo; Francisco Dallmeier; Vitor Gomes; Eliana M. Jimenez; David Neill; Maria Cristina Peñuela Mora; Janaína Costa Noronha; Daniel P. P. de Aguiar; Flávia Rodrigues Barbosa; Yennie K. Bredin; Rainiellen de Sá Carpanedo; Fernanda Antunes Carvalho; Fernanda Coelho de Souza; Kenneth J. Feeley; Rogerio Gribel; Torbjørn Haugaasen; Joseph Hawes; Marcelo Petratti Pansonato; Marcos Ríos Paredes; Domingos Rodrigues; Jos Barlow; Erika Berenguer; Izaias Brasil da Silva; Maria Julia Ferreira; Joice Ferreira; Paul Fine; Marcelino Carneiro Guedes; Carolina Levis; Juan Carlos Licona; Boris Eduardo Villa Zegarra; Vincent Antoine Vos; Carlos Cerón; Flávia Machado Durgante; Emile Fonty; Terry Henkel; John Ethan Householder; Isau Huamantupa-Chuquimaco; Marcos Silveira; Juliana Stropp; Raquel Thomas; Douglas Daly; William Milliken; Guido Pardo Molina; R. Toby Pennington; Ima Vieira; Bianca Weiss Albuquerque; Wegliane Campelo; Alfredo Fuentes; Bente Klitgård; José Luis Marcelo Pena; J. Sebastian Tello; Corine Vriesendorp; Jerome Chave; Anthony Di Fiore; Renato Richard Hilário; Luciana de Oliveira Pereira; Juan Phillips; Gonzalo Rivas-Torres; Tinde van Andel; Patricio von Hildebrand; William Balée; Edelcilio Marques Barbosa; Luiz Carlos de Matos Bonates; Hilda Paulette Dávila Doza; Ricardo Zárate Gómez; Therany Gonzales; George Pepe Gallardo Gonzales; Bruce Hoffman; André Braga Junqueira; Yadvinder Malhi; Ires Paula de Andrade Miranda; Linder Felipe Mozombite Pinto; Adriana Prieto; Agustín Rudas; Ademir R. Ruschel; Natalino Silva; César I. A. Vela; Stanford Zent; Egleé L. Zent; Ángela Cano; Yrma Andreina Carrero Márquez; Diego F. Correa; Janaina Barbosa Pedrosa Costa; Bernardo Monteiro Flores; David Galbraith; Milena Holmgren; Michelle Kalamandeen; Guilherme Lobo; Luis Torres Montenegro; Marcelo Trindade Nascimento; Alexandre A. Oliveira; Maihyra Marina Pombo; Hirma Ramirez-Angulo; Maira Rocha; Veridiana Scudeller; María Natalia Umaña; Geertje M. F. van der Heijden; Emilio Vilanova Torre; Manuel Augusto Ahuite Reategui; Cláudia Baider; Henrik Balslev; Sasha Cárdenas; Luisa Fernanda Casas; William Farfan Rios; Cid Ferreira; Reynaldo Linares-Palomino; Casimiro Mendoza; Italo Mesones; Germaine Alexander Parada; Armando Torres-Lezama; Ligia Estela Urrego Giraldo; Daniel Villarroel; Roderick Zagt; Miguel N. Alexiades; Edmar Oliveira; Karina Garcia Cabrera; Lionel Hernandez; Walter Palacios Cuenca; Susamar Pansini; Daniela Pauletto; Freddy Ramirez Arevalo; Adeilza Felipe Sampaio; Elvis H. Valderrama Sandoval; Luis Valenzuela Gamarra; Kyle Dexter

doi:10.5061/dryad.q573n5tqm

Jeu de données

Data from: Geography and ecology shape the phylogenetic composition of Amazonian tree communities

Bruno Garcia Luize, Bruno Luize, David Bauman, Hans ter Steege, Clarisse Palma da Silva, Iêda Amaral, Luiz de Souza Coelho, Francisca Dionízia de Almeida Matos, Diógenes de Andrade Lima Filho, Rafael Salomão, …

Dryad

06/02/2024

DOI: https://doi.org/10.5061/dryad.q573n5tqm

Résumé

behavior and systematics

Community assembly

dispersal limitation

Ecology

Environmental selection

Evolution

Evolutionary Principal Component Analysis

FOS: Biological sciences

Indicator Lineage Analysis

Moran's Eigenvector Maps

Neotropics

niche conservatism

tropical rain forests

Aim: Amazonia hosts more tree species, from numerous evolutionary lineages both young and ancient, than any other biogeographic region. Previous studies have shown that tree lineages colonised multiple edaphic environments and dispersed widely across Amazonia, leading to a hypothesis, which we test, that lineages should not be strongly associated with either geographic regions or edaphic forest types. Location: Amazonia. Taxon: Angiosperms (Magnoliids; Monocots; Eudicots). Methods: Data for the abundance of 5,082 tree species in 1,989 plots were combined with a mega-phylogeny. We applied evolutionary ordination to assess how phylogenetic composition varies across Amazonia. We used variation partitioning and Moran’s eigenvector maps (MEM) to test and quantify the separate and joint contributions of spatial and environmental variables to explain the phylogenetic composition of plots. We tested the indicator value of lineages for geographic regions and edaphic forest types and mapped associations onto the phylogeny. Results: In the terra firme and várzea forest types, phylogenetic composition varies by geographic region, but the igapó and white-sand forest types retain a unique evolutionary signature regardless of region. Overall, we find that soil chemistry, climate, and topography explain 24% of the variation in phylogenetic composition, with 79% of that variation being spatially structured (R 2 = 19% overall for combined spatial/environmental effects). Phylogenetic composition also shows substantial spatial patterns not related to the environmental variables we quantified (R 2 = 28%). A greater number of lineages were significant indicators of geographic regions than forest types. Main conclusions: Numerous tree lineages, including some ancient ones (>66 Ma), show strong associations with geographic regions and edaphic forest types of Amazonia. This shows that specialization on specific edaphic environments has played a long-standing role in the evolutionary assembly of Amazonian forests. Furthermore, many lineages, even those that have dispersed across Amazonia, dominate within a specific region, likely because of phylogenetically conserved niches for environmental conditions that are prevalent within regions.

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Titre: Data from: Geography and ecology shape the phylogenetic composition of Amazonian tree communities
Créateurs - sans rôle: Bruno Garcia Luize - Universidade Estadual de Campinas (UNICAMP)
Bruno Luize - Universidade Estadual de Campinas (UNICAMP)
David Bauman - Arctic Monitoring And Assessment Programme
Hans ter Steege - Naturalis Biodiversity Center
Clarisse Palma da Silva - Universidade Estadual de Campinas (UNICAMP)
Iêda Amaral - National Institute of Amazonian Research
Luiz de Souza Coelho - National Institute of Amazonian Research
Francisca Dionízia de Almeida Matos - National Institute of Amazonian Research
Diógenes de Andrade Lima Filho - National Institute of Amazonian Research
Rafael Salomão - Coordenação de Aperfeicoamento de Pessoal de Nível Superior
Florian Wittmann - Karlsruhe Institute of Technology
Carolina V. Castilho - Brazilian Agricultural Research Corporation
Marcelo de Jesus Veiga Carim - Instituto de Pesquisas Científicas e Tecnológicas do Amapá
Juan Guevara - Universidad de las Américas
Oliver Phillips - University of Leeds
Willian Magnusson - National Institute of Amazonian Research
Daniel Sabatier - Institut de Recherche pour le Développement
Juan David Cardenas Revilla - National Institute of Amazonian Research
Jean-François Molino - UMR Botanique et Modélisation de l’Architecture des Plantes et des végétations
Mariana V. Irume - National Institute of Amazonian Research
Maria Pires Martins - National Institute of Amazonian Research
José Renan da Silva Guimarães - Amcel Amapá Florestal e Celulose S.A
José Ferreira Ramos - National Institute of Amazonian Research
Olaf S. Bánki - Naturalis Biodiversity Center
Maria Teresa Piedade - National Institute of Amazonian Research
Dairon Cárdenas López - Instituto Sinchi
Nigel Pitman - The Field Museum, USA
Layon O. Demarchi - National Institute of Amazonian Research
Jochen Schöngart - National Institute of Amazonian Research
Evlyn Márcia Moraes de Leão Novo - National Institute for Space Research
Percy Núñez Vargas - National University of Saint Anthony the Abbot in Cuzco
Thiago Silva - University of Stirling
Eduardo Venticinque - Universidade Federal do Rio Grande do Norte
Angelo Gilberto Manzatto - Universidade Federal de Rondônia
Neidiane Farias Costa Reis - Universidade Federal de Rondônia
John Terborgh - University of Florida
Katia Regina Casula - Universidade Federal de Rondônia
Eurídice Honorio Coronado - Instituto de Investigaciones de la Amazonía Peruana
Abel Monteagudo Mendoza - National University of Saint Anthony the Abbot in Cuzco
Juan Carlos Montero - Bolivian Forest Research Institute
Flávia Costa - National Institute of Amazonian Research
Ted Feldpausch - University of Exeter
Adriano C. Quaresma - National Institute of Amazonian Research
Nicolás Castaño Arboleda - Instituto Sinchi
Charles Zartman - National Institute of Amazonian Research
Timothy J. Killeen - Agteca-Amazonica
Beatriz Marimon - Universidade do Estado de Mato Grosso
Ben Hur Marimon-Junior - Universidade do Estado de Mato Grosso
Rodolfo Vasquez - Jardín Botánico de Missouri
Bonifacio Mostacedo - Gabriel René Moreno Autonomous University
Rafael L. Assis - University of Oslo
Christopher Baraloto - Florida International University
Dário Amaral - Museu Paraense Emílio Goeldi
Julien Engel - Institut de Recherche pour le Développement
Pascal Petronelli - Centre de Coopération Internationale en Recherche Agronomique pour le Développement
Hernán Castellanos - Universidad Nacional Experimental de Guayana
Marcelo Brilhante de Medeiros - Embrapa Recursos Genéticos e Biotecnologia
Marcelo Simon - Embrapa Recursos Genéticos e Biotecnologia
Ana Andrade - National Institute of Amazonian Research
José Luís Camargo - National Institute of Amazonian Research
William Laurance - James Cook University
Susan Laurance - James Cook University
Lorena Maniguaje Rincón - National Institute of Amazonian Research
Juliana Schietti - National Institute of Amazonian Research
Thaiane Rodrigues de Sousa - National Institute of Amazonian Research
Emanuelle de Sousa Farias - Instituto Leônidas e Maria Deane, Fiocruz
Maria Aparecida Lopes - Universidade Federal do Pará
José Leonardo Magalhães - Universidade Federal do Pará
Henrique Eduardo Mendonça Nascimento - National Institute of Amazonian Research
Helder Queiroz - Instituto de Desenvolvimento Sustentável Mamirauá
Gerardo A. Aymard C. - Universidad Nacional Experimental de los Llanos Occidentales Ezequiel Zamora
Roel Brienen - University of Leeds
Pablo Stevenson - Universidad de Los Andes
Alejandro Araujo-Murakami - Gabriel René Moreno Autonomous University
Bruno Barçante Ladvocat Cintra - Universidade de São Paulo
Timothy Baker - University of Leeds
Yuri Oliveira Feitosa - National Institute of Amazonian Research
Hugo Mogollón - Endangered Species Coalition
Joost Duivenvoorden - University of Amsterdam
Carlos Peres - University of East Anglia
Miles Silman - Wake Forest University
Leandro Ferreira - Museu Paraense Emílio Goeldi
Jose R. Lozada - University of the Andes
Jim Comiskey - National Park Service
José Júlio de Toledo - Universidade Federal do Amapá
Gabriel Damasco - University of Gothenburg
Nállarett Dávila - Universidade Estadual de Campinas (UNICAMP)
Frederick Draper - University of Liverpool
Roosevelt García-Villacorta - Centro de Innovación Científica Amazónica
Aline Lopes - Universidade de Brasília
Alberto Vicentini - National Institute of Amazonian Research
Fernando Cornejo Valverde - Andes to Amazon Biodiversity Program
Alfonso Alonso - Smithsonian Conservation Biology Institute
Luzmila Arroyo - Gabriel René Moreno Autonomous University
Francisco Dallmeier - Smithsonian Conservation Biology Institute
Vitor Gomes - Centro Universitário do Pará
Eliana M. Jimenez - Universidad Nacional de Colombia
David Neill - Universidad Estatal Amazónica
Maria Cristina Peñuela Mora - Universidad Regional Amazónica IKIAM
Janaína Costa Noronha - Universidade Federal de Mato Grosso
Daniel P. P. de Aguiar - Ministério Público do Estado do Amazonas
Flávia Rodrigues Barbosa - Universidade Federal de Mato Grosso
Yennie K. Bredin - Norwegian University of Life Sciences
Rainiellen de Sá Carpanedo - Universidade Federal de Mato Grosso
Fernanda Antunes Carvalho - National Institute of Amazonian Research
Fernanda Coelho de Souza - National Institute of Amazonian Research
Kenneth J. Feeley - University of Miami
Rogerio Gribel - National Institute of Amazonian Research
Torbjørn Haugaasen - Norwegian University of Life Sciences
Joseph Hawes - Norwegian University of Life Sciences
Marcelo Petratti Pansonato - National Institute of Amazonian Research
Marcos Ríos Paredes - Servicios de Biodiversidad EIRL
Domingos Rodrigues - Universidade Federal de Mato Grosso
Jos Barlow - Lancaster University
Erika Berenguer - University of Oxford
Izaias Brasil da Silva - Universidade Federal do Acre
Maria Julia Ferreira - Universidade Federal Rural de Pernambuco
Joice Ferreira - Brazilian Agricultural Research Corporation
Paul Fine - University of California, Berkeley
Marcelino Carneiro Guedes - Brazilian Agricultural Research Corporation
Carolina Levis - Universidade Federal de Santa Catarina
Juan Carlos Licona - Bolivian Forest Research Institute
Boris Eduardo Villa Zegarra - Direccíon de Evaluación Forestal y de Fauna Silvestre
Vincent Antoine Vos - Universidad Autónoma del Beni
Carlos Cerón - Universidad Central, Ecuador
Flávia Machado Durgante - National Institute of Amazonian Research
Emile Fonty - Office National des Forêts
Terry Henkel - Cal Poly Humboldt
John Ethan Householder - Karlsruhe Institute of Technology
Isau Huamantupa-Chuquimaco - Amazon National University of Madre de Dios
Marcos Silveira - Universidade Federal do Acre
Juliana Stropp - Museo Nacional de Ciencias Naturales
Raquel Thomas - Iwokrama International Centre for Rainforest Conservation and Development
Douglas Daly - New York Botanical Garden
William Milliken - Royal Botanic Gardens, Kew
Guido Pardo Molina - Universidad Autónoma del Beni
R. Toby Pennington - University of Exeter
Ima Vieira - Museu Paraense Emílio Goeldi
Bianca Weiss Albuquerque - National Institute of Amazonian Research
Wegliane Campelo - Universidade Federal do Amapá
Alfredo Fuentes - Universidad Mayor de San Andrés
Bente Klitgård - Royal Botanic Gardens, Kew
José Luis Marcelo Pena - Universidad Nacional de Jaén
J. Sebastian Tello - Missouri Botanical Garden
Corine Vriesendorp - Field Museum of Natural History
Jerome Chave - Université Toulouse III - Paul Sabatier
Anthony Di Fiore - The University of Texas at Austin
Renato Richard Hilário - Universidade Federal do Amapá
Luciana de Oliveira Pereira - University of Exeter
Juan Phillips - Fundación Puerto Rastrojo
Gonzalo Rivas-Torres - Universidad San Francisco de Quito
Tinde van Andel - University of Oxford
Patricio von Hildebrand - Fundación Estación de Biología
William Balée - Tulane University
Edelcilio Marques Barbosa - National Institute of Amazonian Research
Luiz Carlos de Matos Bonates - National Institute of Amazonian Research
Hilda Paulette Dávila Doza - Servicios de Biodiversidad EIRL
Ricardo Zárate Gómez - Instituto de Investigaciones de la Amazonía Peruana
Therany Gonzales - ACEER Foundation
George Pepe Gallardo Gonzales - Servicios de Biodiversidad EIRL
Bruce Hoffman - Amazon Conservation Team
André Braga Junqueira - Universitat Autònoma de Barcelona
Yadvinder Malhi - University of Oxford
Ires Paula de Andrade Miranda - National Institute of Amazonian Research
Linder Felipe Mozombite Pinto - Servicios de Biodiversidad EIRL
Adriana Prieto - Universidad Nacional de Colombia
Agustín Rudas - Universidad Nacional de Colombia
Ademir R. Ruschel - Brazilian Agricultural Research Corporation
Natalino Silva - Universidade Federal Rural da Amazônia
César I. A. Vela - National University of Saint Anthony the Abbot in Cuzco
Stanford Zent - Instituto Venezolano de Investigaciones Científicas
Egleé L. Zent - Instituto Venezolano de Investigaciones Científicas
Ángela Cano - Universidad de Los Andes
Yrma Andreina Carrero Márquez - University of the Andes
Diego F. Correa - Universidad de Los Andes
Janaina Barbosa Pedrosa Costa - Brazilian Agricultural Research Corporation
Bernardo Monteiro Flores - Universidade Federal de Santa Catarina
David Galbraith - University of Leeds
Milena Holmgren - Wageningen University & Research
Michelle Kalamandeen - McMaster University
Guilherme Lobo - Universidade Estadual de Campinas (UNICAMP)
Luis Torres Montenegro - Universidad Nacional de la Amazonía Peruana
Marcelo Trindade Nascimento - State University of Norte Fluminense
Alexandre A. Oliveira - Universidade de São Paulo
Maihyra Marina Pombo - National Institute of Amazonian Research
Hirma Ramirez-Angulo - University of the Andes
Maira Rocha - National Institute of Amazonian Research
Veridiana Scudeller - Universidade Federal do Amazonas
María Natalia Umaña - University of Michigan
Geertje M. F. van der Heijden - University of Nottingham
Emilio Vilanova Torre - University of the Andes
Manuel Augusto Ahuite Reategui - PLUSPRETOL
Cláudia Baider - Ministry of Agro Industry and Food Security
Henrik Balslev - Aarhus University
Sasha Cárdenas - Universidad de Los Andes
Luisa Fernanda Casas - Universidad de Los Andes
William Farfan Rios - Wake Forest University
Cid Ferreira - National Institute of Amazonian Research
Reynaldo Linares-Palomino - Smithsonian Conservation Biology Institute
Casimiro Mendoza - University of San Simón
Italo Mesones - University of California, Berkeley
Germaine Alexander Parada - Museo de Historia Natural Noel Kempff Mercado
Armando Torres-Lezama - Universidad de Los Andes
Ligia Estela Urrego Giraldo - Universidad Nacional de Colombia
Daniel Villarroel - Museo de Historia Natural Noel Kempff Mercado
Roderick Zagt - Tropenbos International
Miguel N. Alexiades - University of Kent
Edmar Oliveira - Universidade do Estado de Mato Grosso
Karina Garcia Cabrera - Wake Forest University
Lionel Hernandez - Universidad Nacional Experimental de Guayana
Walter Palacios Cuenca - Universidad Técnica del Norte
Susamar Pansini - Universidade Federal de Rondônia
Daniela Pauletto - Universidade Federal do Oeste do Pará
Freddy Ramirez Arevalo - Universidad Nacional de la Amazonía Peruana
Adeilza Felipe Sampaio - Universidade Federal de Rondônia
Elvis H. Valderrama Sandoval - University of Missouri
Luis Valenzuela Gamarra - Missouri Botanical Garden
Kyle Dexter - University of Edinburgh
Éditeur: Dryad
Note de subvention: 302962/2022-0 / National Council for Scientific and Technological Development (https://ror.org/03swz6y49) Coordenação de Aperfeicoamento de Pessoal de Nível Superior (https://ror.org/00x0ma614) 2019/24823-2 / São Paulo Research Foundation (https://ror.org/02ddkpn78) 895799 / European Union's Horizon 2020 - Marie Skłodowska-Curie* 2021/10639-5 / São Paulo Research Foundation (https://ror.org/02ddkpn78) 2020/03379-4 / São Paulo Research Foundation (https://ror.org/02ddkpn78) 2021/11670-3 / São Paulo Research Foundation (https://ror.org/02ddkpn78)
Identifiants: 99135048309311
Unité académique: BotAnique et Modélisation de l'Architecture des Plantes et des végétations - AMAP
Langue: English
Type de ressource: Dataset