Data from: Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

Annegret Kohler; Alan Kuo; Laszlo G. Nagy; Emmanuelle Morin; Kerrie W. Barry; Francois Buscot; Bjorn Canback; Cindy Choi; Nicolas Cichocki; Alicia Clum; Jan Colpaert; Alex Copeland; Mauricio D. Costa; Jeanne Dore; Dimitrios Floudas; Gilles Gay; Mariangela Girlanda; Bernard Henrissat; Sylvie Herrmann; Jaqueline Hess; Nils Hogberg; Tomas Johansson; Hassine-Radhouane Khouja; Kurt LaButti; Urs Lahrmann; Anthony Levasseur; Erika A. Lindquist; Anna Lipzen; Roland Marmeisse; Elena Martino; Claude Murat; Chew Y. Ngan; Uwe Nehls; Jonathan M. Plett; Anne Pringle; Robin A. Ohm; Silvia Perotto; Robert Riley; Francois Rineau; Joske Ruytinx; Asaf Salamov; Firoz Shah; Hui Sun; Mika Tarkka; Andrew Tritt; Claire Fourrey-Veneault; Alga Zuccaro; Marc Buee; Yi Din; Monique Gardes; Gwen Grelet; Herve Gryta; Patricia Jargeat; Martina Peter; Sabine Zimmermann; Yaron Sitrit; Anders Tunlid; Igor V. Grigoriev; David S. Hibbett; Francis Martin

doi:10.5061/dryad.f2g0f

Jeu de données

Data from: Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

Annegret Kohler, Alan Kuo, Laszlo G. Nagy, Emmanuelle Morin, Kerrie W. Barry, Francois Buscot, Bjorn Canback, Cindy Choi, Nicolas Cichocki, Alicia Clum, …

Dryad

26/01/2016

DOI: https://doi.org/10.5061/dryad.f2g0f

Résumé

Agaricales

Agaricomycotina

alignments

Amanita muscaria

Amanita thiersii

Amylocorticiales

Basidiomycota

Boletales

Galerina marginata

gene families

gene phyogenies

Gymnopus luxurians

Hebeloma cylindrosporum

Hydnomerulius pinastri

Hypholoma sublateritium

Paxillus involutus

Paxillus rubicundulus

Piloderma croceum

Pisolithus microcarpus

Pisolithus tinctorius

Plicaturopsis crispa

Scleroderma citrinum

Sebacina vermifera

species phylogeny

species phyogeny

Sphaerobolus stellatus

Suillus luteus

Tulasnella calospora

wood decay

To elucidate the genetic bases of mycorrhizal lifestyle evolution, we sequenced new fungal genomes, including 13 ectomycorrhizal (ECM), orchid (ORM) and ericoid (ERM) species, and five saprotrophs, which we analyzed along with other fungal genomes. Ectomycorrhizal fungi have a reduced complement of genes encoding plant cell wall–degrading enzymes (PCWDEs), as compared to their ancestral wood decayers. Nevertheless, they have retained a unique array of PCWDEs, thus suggesting that they possess diverse abilities to decompose lignocellulose. Similar functional categories of nonorthologous genes are induced in symbiosis. Of induced genes, 7–38% are orphan genes, including genes that encode secreted effector-like proteins. Convergent evolution of the mycorrhizal habit in fungi occurred via the repeated evolution of a 'symbiosis toolkit', with reduced numbers of PCWDEs and lineage-specific suites of mycorrhiza-induced genes.

Fichiers et liens (1)

url

https://doi.org/10.5061/dryad.f2g0fAfficher

Ouvrir

Indicateurs

1 Consultations de la notice

See more details

Détails

Titre: Data from: Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
Créateurs - sans rôle: Annegret Kohler - Labex ARBRE
Alan Kuo - Joint Genome Institute
Laszlo G. Nagy - Clark University
Emmanuelle Morin - Labex ARBRE
Kerrie W. Barry - Joint Genome Institute
Francois Buscot - Helmholtz Centre for Environmental Research
Bjorn Canback
Cindy Choi - Joint Genome Institute
Nicolas Cichocki - Labex ARBRE
Alicia Clum - Joint Genome Institute
Jan Colpaert - University of Hasselt
Alex Copeland - Joint Genome Institute
Mauricio D. Costa - National Council for Scientific and Technological Development
Jeanne Dore - Université Claude Bernard Lyon 1
Dimitrios Floudas - Clark University
Gilles Gay - Université Claude Bernard Lyon 1
Mariangela Girlanda - University of Turin
Bernard Henrissat - Aix-Marseille Université
Sylvie Herrmann - Helmholtz Centre for Environmental Research
Jaqueline Hess - University of Oslo
Nils Hogberg - Swedish University of Agricultural Sciences
Tomas Johansson - Lund University
Hassine-Radhouane Khouja - University of Turin
Kurt LaButti - Joint Genome Institute
Urs Lahrmann - Max Planck Institute for Terrestrial Microbiology
Anthony Levasseur - Aix-Marseille Université
Erika A. Lindquist - Joint Genome Institute
Anna Lipzen - Joint Genome Institute
Roland Marmeisse - Université Claude Bernard Lyon 1
Elena Martino - Labex ARBRE
Claude Murat - Labex ARBRE
Chew Y. Ngan - Joint Genome Institute
Uwe Nehls - University of Bremen
Jonathan M. Plett - Labex ARBRE
Anne Pringle - Harvard University
Robin A. Ohm - Joint Genome Institute
Silvia Perotto - University of Turin
Robert Riley - Joint Genome Institute
Francois Rineau
Joske Ruytinx - University of Hasselt
Asaf Salamov - Joint Genome Institute
Firoz Shah - Lund University
Hui Sun - Joint Genome Institute
Mika Tarkka - Helmholtz Centre for Environmental Research
Andrew Tritt - Joint Genome Institute
Claire Fourrey-Veneault - Labex ARBRE
Alga Zuccaro - Max Planck Institute for Terrestrial Microbiology
Marc Buee
Yi Din
Monique Gardes
Gwen Grelet
Herve Gryta
Patricia Jargeat
Martina Peter - Swiss Federal Institute for Forest, Snow and Landscape Research
Sabine Zimmermann
Yaron Sitrit
Anders Tunlid - Lund University
Igor V. Grigoriev - Joint Genome Institute
David S. Hibbett - Clark University
Francis Martin - University of Hasselt
Éditeur: Dryad
Identifiants: 99154970309311
Unité académique: Institut des Sciences des Plantes de Montpellier - IPSiM
Langue: English
Type de ressource: Dataset