Pattern Matching in discrete Models for Ecosystem Ecology

Cinzia Di Giusto; Cédric Gaucherel; Hanna Klaudel; Franck Pommereau

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Pattern Matching in discrete Models for Ecosystem Ecology

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Pattern Matching in discrete Models for Ecosystem Ecology

Cinzia Di Giusto, Cédric Gaucherel, Hanna Klaudel et Franck Pommereau

Proc. of the 10th International Conference on Bioinformatics Models, Methods and Algorithms (Bioinformatics 2019), pp.101--111

Proc. of the 10th International Conference on Bioinformatics Models, Methods and Algorithms (Bioinformatics 2019)

10th International Conference on Bioinformatics Models, Methods and Algorithms (Bioinformatics 2019) (Prague, Czech Republic, 22/02/2019–24/02/2019)

22/02/2019

Résumé

ecosystems

pattern matching

Rewriting systems

similarity rate

In this paper we consider discrete qualitative models of ecosystems viewed as collections of interacting living (animals, plants.. .) and nonliving entities (air, water, soil.. .), whose conditions of appearance/disappearance are controlled by a set of formal rules (i.e., processes). We present here a rule-based method allowing to compare ecosystems. The method relies on a measure of similarity and on an optimization algorithm. In addition, the proposed method allows to detect patterns (i.e., ecological processes or sets of processes) in ecosystems. We have validated the method by applying it against a set of models and patterns provided by ecologists.

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Titre: Pattern Matching in discrete Models for Ecosystem Ecology
Créateurs - sans rôle: Cinzia Di Giusto - Constraints and Applications
Cédric Gaucherel - Université de Montpellier, BotAnique et Modélisation de l'Architecture des Plantes et des végétations - AMAP
Hanna Klaudel - Informatique, BioInformatique, Systèmes Complexes
Franck Pommereau - Informatique, BioInformatique, Systèmes Complexes
Détails de publication: Proc. of the 10th International Conference on Bioinformatics Models, Methods and Algorithms (Bioinformatics 2019), pp.101--111
Colloque: 10th International Conference on Bioinformatics Models, Methods and Algorithms (Bioinformatics 2019) (Prague, Czech Republic, 22/02/2019–24/02/2019)
Publications en série: Proc. of the 10th International Conference on Bioinformatics Models, Methods and Algorithms (Bioinformatics 2019)
Identifiants: 9938105009311
Unité académique: BotAnique et Modélisation de l'Architecture des Plantes et des végétations - AMAP
Langue: English
Type de ressource: Conference proceeding
Champs locaux: hal-02002550