NCBO Annotator: Semantic Annotation of Biomedical Data

Clement Jonquet; Nigam H. Shah; Cherie H. Youn; Mark A. Musen; Chris Callendar; Margaret-Anne Storey

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NCBO Annotator: Semantic Annotation of Biomedical Data

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NCBO Annotator: Semantic Annotation of Biomedical Data

Clement Jonquet, Nigam H. Shah, Cherie H. Youn, Mark A. Musen, Chris Callendar et Margaret-Anne Storey

8th International Semantic Web Conference, Poster and Demo Session (ISWC 2009), (171)

ISWC 2009 - 8. International Semantic Web Conference (Washington, United States, 25/10/2009–29/10/2009)

Résumé

Biomedical ontologies

Ontology-based annotation

Automatic annotation

Semantic annotation

Web service

Concept recognition

Semantic expansion

Named entity recognition

The National Center for Biomedical Ontology Annotator is an ontology-based web service for annotation of textual biomedical data with biomedical ontology concepts. The biomedical community can use the Annotator service to tag datasets automatically with concepts from more than 200 ontologies coming from the two most important set of biomedical ontology & terminology repositories: the UMLS Metathesaurus and NCBO BioPortal. Through annotation (or tagging) of datasets with ontology concepts, unstructured free-text data becomes structured and standardized. Such annotations contribute to create a biomedical semantic web that facilitates translational scientific discoveries by integrating annotated data.

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Titre: NCBO Annotator: Semantic Annotation of Biomedical Data
Créateurs - sans rôle: Clement Jonquet - Mathématiques, Informatique et Statistique pour l'Environnement et l'Agronomie
Nigam H. Shah - Stanford Center for BioMedical Informatics Research
Cherie H. Youn - Stanford Center for BioMedical Informatics Research
Mark A. Musen - Stanford Center for BioMedical Informatics Research
Chris Callendar - University of Victoria
Margaret-Anne Storey - University of Victoria
Détails de publication: 8th International Semantic Web Conference, Poster and Demo Session (ISWC 2009), (171)
Colloque: ISWC 2009 - 8. International Semantic Web Conference (Washington, United States, 25/10/2009–29/10/2009)
Identifiants: 99130676909311
Unité académique: Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier - LIRMM
Langue: English
Type de ressource: Conference proceeding
Champs locaux: hal-04276274