An automated image-processing pipeline for high-throughput analysis of root architecture in OpenAlea

Julien Diener; Phillipe Nacry; Christophe Périn; Anne Diévart; Xavier Draye; Frédéric Boudon; Alain Gojon; Bertrand Muller; Christophe Pradal; Christophe Godin

An automated image-processing pipeline for high-throughput analysis of root architecture in OpenAlea

Acte de colloque

Open Access

An automated image-processing pipeline for high-throughput analysis of root architecture in OpenAlea

Julien Diener, Phillipe Nacry, Christophe Périn, Anne Diévart, Xavier Draye, Frédéric Boudon, Alain Gojon, Bertrand Muller, Christophe Pradal et Christophe Godin

7th International Conference on Functional-Structural Plant Models, pp.85-87

7th International Conference on Functional-Structural Plant Models (Saariselkä, Finland, 09/06/2013–14/06/2013)

06/2013

Résumé

Root architecture

Image processing

Analysis pipeline

High-throughput

OpenAlea

oryza sativa

arabidopsis thaliana

système racinaire

architecture racinaire

pipeline

FSPM analysis of root systems requires structural data obtained on large data set. This paper describes a processing pipeline developed to extract automatically the architecture of root system from images databases.

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Détails

Titre: An automated image-processing pipeline for high-throughput analysis of root architecture in OpenAlea
Créateurs - sans rôle: Julien Diener - Plant (United States)
Phillipe Nacry - Université de Montpellier, Institut des Sciences des Plantes de Montpellier - IPSiM
Christophe Périn - Amélioration génétique et adaptation des plantes méditerranéennes et tropicales
Anne Diévart - Amélioration génétique et adaptation des plantes méditerranéennes et tropicales
Xavier Draye - Earth and Life Institute [Louvain-La-Neuve]
Frédéric Boudon - Plant (United States)
Alain Gojon - Université de Montpellier, Institut des Sciences des Plantes de Montpellier - IPSiM
Bertrand Muller - Écophysiologie des Plantes sous Stress environnementaux
Christophe Pradal - Plant (United States)
Christophe Godin - Plant (United States)
Contributeurs - sans rôle: Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren
Détails de publication: 7th International Conference on Functional-Structural Plant Models, pp.85-87
Colloque: 7th International Conference on Functional-Structural Plant Models (Saariselkä, Finland, 09/06/2013–14/06/2013)
Note de subvention: Agropolis Fondation contrat OpenAlea
Identifiants: 9963344309311
Unité académique: Institut des Sciences des Plantes de Montpellier - IPSiM
Langue: English
Type de ressource: Conference proceeding
Champs locaux: hal-00850814