dipwmsearch: a python package for searching di-PWM motifs

Marie Mille; Julie Ripoll; Bastien Cazaux; Eric Rivals

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dipwmsearch: a python package for searching di-PWM motifs

Marie Mille, Julie Ripoll, Bastien Cazaux and Eric Rivals

Abstract

Bioinformatics

Genomics

Computationnal biology

This package provides efficient functions to search for one kind of probabilistic motifs known as di-nucleotidic Position Weight Matrices (di-PWMs) in a genomic sequence. The genomic sequence may contain positions with non-ATGC symbols, encoded with IUPAC.

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Title: dipwmsearch: a python package for searching di-PWM motifs
Creators - without role: Marie Mille - Méthodes et Algorithmes pour la Bioinformatique
Julie Ripoll - Méthodes et Algorithmes pour la Bioinformatique
Bastien Cazaux - Méthodes et Algorithmes pour la Bioinformatique
Eric Rivals - Méthodes et Algorithmes pour la Bioinformatique
Identifiers: 9946725309311
Academic Unit: Laboratoire d'Informatique de Robotique et de Microélectronique de Mtp - LIRMM
Language: English
Resource Type: Code
Local Fields: lirmm-04395771
Description Technical info: Version: 0.1.7; Development Status: active; Programming Language: Python 3; Operating System: Linux, Unix sytems and Mac OSX systems