The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium

J. Mark Cock; Lieven Sterck; Sophia Ahmed; Andrew E. Allen; Grigoris Amoutzias; Veronique Anthouard; Francois Artiguenave; Alok Arun; Jean-Marc Aury; Jonathan H. Badger; Bank Beszteri; Kenny Billiau; Eric Bonnet; John H. Bothwell; Chris Bowler; Catherine Boyen; Colin Brownlee; Carl J. Carrano; Benedicte Charrier; Ga Youn Cho; Susana M. Coelho; Jonas Collen; Gildas Le Corguille; Erwan Corre; Laurence Dartevelle; Corinne Da Silva; Ludovic Delage; Nicolas Delaroque; Simon M. Dittami; Sylvie Doulbeau; Marek Elias; Garry Farnham; Claire M. M. Gachon; Olivier Godfroy; Bernhard Gschloessl; Svenja Heesch; Kamel Jabbari; Claire Jubin; Hiroshi Kawai; Kei Kimura; Bernard Kloareg; Frithjof C. Kuepper; Daniel Lang; Aude Le Bail; Remy Luthringer; Catherine Leblanc; Patrice Lerouge; Martin Lohr; Pascal J. Lopez; Nicolas Macaisne; Cindy Martens; Florian Maumus; Gurvan Michel; Diego Miranda-Saavedra; Julia Morales; Herve Moreau; Taizo Motomura; Chikako Nagasato; Carolyn A. Napoli; David R. Nelson; Pi Nyvall-Collen; Akira F. Peters; Cyril Pommier; Philippe Potin; Julie Poulain; Hadi Quesneville; Betsy Read; Stefan A. Rensing; Andres Ritter; Sylvie Rousvoal; Manoj Samanta; Gaelle Samson; Declan C. Schroeder; Delphine Scornet; Beatrice Segurens; Martina Strittmatter; Thierry Tonon; James W. Tregear; Klaus Valentin; Peter Von Dassow; Takahiro Yamagishi; Pierre Rouze; Yves Van de Peer; Patrick Wincker; Ectocarpus Genome Consortium

doi:10.1016/B978-0-12-391499-6.00005-0

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The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium

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The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium

J. Mark Cock, Lieven Sterck, Sophia Ahmed, Andrew E. Allen, Grigoris Amoutzias, Veronique Anthouard, Francois Artiguenave, Alok Arun, Jean-Marc Aury, Jonathan H. Badger, …

Advances in Botanical Research, pp.141-184

Advances in Botanical Research, Elsevier

01/01/2012

DOI: https://doi.org/10.1016/B978-0-12-391499-6.00005-0

Résumé

Life Sciences & Biomedicine

Plant Sciences

Science & Technology

Brown algae are important organisms both because of their key ecological roles in coastal ecosystems and because of the remarkable biological features that they have acquired during their unusual evolutionary history. The recent sequencing of the complete genome of the filamentous brown alga Ectocarpus has provided unprecedented access to the molecular processes that underlie brown algal biology. Analysis of the genome sequence, which exhibits several unusual structural features, identified genes that are predicted to play key roles in several aspects of brown algal metabolism, in the construction of the multicellular bodyplan and in resistance to biotic and abiotic stresses. Information from the genome sequence is currently being used in combination with other genomic, genetic and biochemical tools to further investigate these and other aspects of brown algal biology at the molecular level. Here, we review some of the major discoveries that emerged from the analysis of the Ectocarpus genome sequence, with a particular focus on the unusual genome structure, inferences about brown algal evolution and novel aspects of brown algal metabolism.

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Détails

Titre: The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium
Créateurs - sans rôle: J. Mark Cock - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Lieven Sterck - Univ Ghent VIB, Dept Plant Syst Biol, B-9052 Ghent, Belgium
Sophia Ahmed - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Andrew E. Allen - J Craig Venter Inst, San Diego, CA 92121 USA
Grigoris Amoutzias - Univ Ghent VIB, Dept Plant Syst Biol, B-9052 Ghent, Belgium
Veronique Anthouard - CEA, DSV, Inst Genom, F-91057 Evry, France
Francois Artiguenave - CEA, DSV, Inst Genom, F-91057 Evry, France
Alok Arun - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Jean-Marc Aury - CEA, DSV, Inst Genom, F-91057 Evry, France
Jonathan H. Badger - J. Craig Venter Institute
Bank Beszteri - Alfred Wegener Inst Polar & Marine Res, D-27570 Bremerhaven, Germany
Kenny Billiau - Univ Ghent VIB, Dept Plant Syst Biol, B-9052 Ghent, Belgium
Eric Bonnet - Univ Ghent VIB, Dept Plant Syst Biol, B-9052 Ghent, Belgium
John H. Bothwell - Queens Univ Belfast, Sch Biol Sci, Belfast BT9 7BL, Antrim, North Ireland
Chris Bowler - Ecole Normale Super, IBENS, CNRS, UMR8197, F-75005 Paris, France
Catherine Boyen - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Colin Brownlee - Marine Biol Assoc UK, Lab, Plymouth PL1 2PB, Devon, England
Carl J. Carrano - San Diego State University
Benedicte Charrier - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Ga Youn Cho - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Susana M. Coelho - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Jonas Collen - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Gildas Le Corguille - Stn Biol Roscoff, Comp & Genom Resource Ctr, FR 2424, F-29682 Roscoff, France
Erwan Corre - Stn Biol Roscoff, Comp & Genom Resource Ctr, FR 2424, F-29682 Roscoff, France
Laurence Dartevelle - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Corinne Da Silva - CEA, DSV, Inst Genom, F-91057 Evry, France
Ludovic Delage - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Nicolas Delaroque - IZI, Fraunhofer Inst Cell Therapy & Immunol, D-04103 Leipzig, Germany
Simon M. Dittami - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Sylvie Doulbeau - IRD, IRD CIRAD Palm Dev Biol Grp, UMR DIAPC 1097, F-34394 Montpellier, France
Marek Elias - University of Ostrava
Garry Farnham - Marine Biol Assoc UK, Lab, Plymouth PL1 2PB, Devon, England
Claire M. M. Gachon - Scottish Assoc Marine Sci Culture Collect Algae &, Scottish Marine Inst, Oban PA37 1QA, Argyll, Scotland
Olivier Godfroy - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Bernhard Gschloessl - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Svenja Heesch - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Kamel Jabbari - CEA, DSV, Inst Genom, F-91057 Evry, France
Claire Jubin - CEA, DSV, Inst Genom, F-91057 Evry, France
Hiroshi Kawai
Kei Kimura - Hokkaido University
Bernard Kloareg - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Frithjof C. Kuepper - Scottish Assoc Marine Sci Culture Collect Algae &, Scottish Marine Inst, Oban PA37 1QA, Argyll, Scotland
Daniel Lang - Univ Freiburg, Fac Biol, D-79104 Freiburg, Germany
Aude Le Bail - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Remy Luthringer - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Catherine Leblanc - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Patrice Lerouge - Univ Rouen, Lab GlycoMEV EA 4358, IFRMP 23, F-76821 Mont St Aignan, France
Martin Lohr - Johannes Gutenberg University Mainz
Pascal J. Lopez - Ecole Normale Super, IBENS, CNRS, UMR8197, F-75005 Paris, France
Nicolas Macaisne - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Cindy Martens - Univ Ghent VIB, Dept Plant Syst Biol, B-9052 Ghent, Belgium
Florian Maumus - Ecole Normale Super, IBENS, CNRS, UMR8197, F-75005 Paris, France
Gurvan Michel - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Diego Miranda-Saavedra - Osaka Univ, WPI, Immunol Frontier Res Ctr IFReC, Suita, Osaka 5650871, Japan
Julia Morales - Univ Paris 06, UMR Mer & Sante 7150, Equipe Traduct Cycle Cellulaire & Dev, Stn Biol Roscoff, F-29680 Roscoff, France
Herve Moreau - Lab ARAGO, F-66651 Banyuls Sur Mer, France
Taizo Motomura - Hokkaido University
Chikako Nagasato - Hokkaido University
Carolyn A. Napoli - University of Arizona
David R. Nelson - Univ Tennessee, Hlth Sci Ctr, Dept Mol Sci, Memphis, TN 38163 USA
Pi Nyvall-Collen - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Akira F. Peters - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Cyril Pommier - INRA, Ctr Rech Versailles, Unite Rech Genom Info UR INRA 1164, F-78026 Versailles, France
Philippe Potin - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Julie Poulain - CEA, DSV, Inst Genom, F-91057 Evry, France
Hadi Quesneville - INRA, Ctr Rech Versailles, Unite Rech Genom Info UR INRA 1164, F-78026 Versailles, France
Betsy Read - Calif State Univ, San Marcos, CA 92096 USA
Stefan A. Rensing - Univ Freiburg, Fac Biol, D-79104 Freiburg, Germany
Andres Ritter - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Sylvie Rousvoal - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Manoj Samanta - Systemix Inst, Redmond, WA 98053 USA
Gaelle Samson - CEA, DSV, Inst Genom, F-91057 Evry, France
Declan C. Schroeder - Marine Biol Assoc UK, Lab, Plymouth PL1 2PB, Devon, England
Delphine Scornet - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
Beatrice Segurens - CEA, DSV, Inst Genom, F-91057 Evry, France
Martina Strittmatter - Scottish Assoc Marine Sci Culture Collect Algae &, Scottish Marine Inst, Oban PA37 1QA, Argyll, Scotland
Thierry Tonon - Univ Paris 06, Marine Plants & Biomol Lab, UMR 7139, Stn Biol Roscoff, F-29682 Roscoff, France
James W. Tregear - IRD, IRD CIRAD Palm Dev Biol Grp, UMR DIAPC 1097, F-34394 Montpellier, France
Klaus Valentin - Alfred Wegener Inst Polar & Marine Res, D-27570 Bremerhaven, Germany
Peter Von Dassow - CNRS, UMR Evolut Plancton & PaleOceans 7144, Stn Biol Roscoff, F-29682 Roscoff, France
Takahiro Yamagishi
Pierre Rouze - Univ Ghent VIB, Dept Plant Syst Biol, B-9052 Ghent, Belgium
Yves Van de Peer - Univ Ghent VIB, Dept Plant Syst Biol, B-9052 Ghent, Belgium
Patrick Wincker - CEA, DSV, Inst Genom, F-91057 Evry, France
Ectocarpus Genome Consortium
Contributeurs - sans rôle: G Piganeau
Détails de publication: Advances in Botanical Research, pp.141-184
Publications en série: Advances in Botanical Research
Éditeur: Elsevier; LONDON
Nombre de pages: 44
Note de subvention: NE/J00460X/1 / Natural Environment Research Council; UK Research & Innovation (UKRI); Natural Environment Research Council (NERC) dml010007 / NERC; UK Research & Innovation (UKRI); Natural Environment Research Council (NERC)
Identifiants: 99149738409311
Unité académique: Diversité, Adaptation et Développement des plantes - DIADE
Langue: English
Type de ressource: Book chapter